RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ASIC4Q96FT7 647 aa20.33■□□□□ 0.85
CLN3-205ENST00000359984 SPATA13Q96N96 652 aa20.33■□□□□ 0.85
CLN3-205ENST00000359984 SPON2Q9BUD6 331 aa20.33■□□□□ 0.85
CLN3-205ENST00000359984 BBS2Q9BXC9 721 aa20.33■□□□□ 0.85
CLN3-205ENST00000359984 WHRNQ9P202 907 aa20.33■□□□□ 0.85
CLN3-205ENST00000359984 NFU1Q9UMS0 254 aa20.33■□□□□ 0.85
CLN3-205ENST00000359984 DOCK8Q8NF50 2099 aa20.33■□□□□ 0.85
CLN3-205ENST00000359984 NEDD8-MDP1E9PL57 170 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 TP73O15350 636 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 JCHAINP01591 159 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 CCNB1P14635 433 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 ITIH2P19823 946 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 MZF1P28698 734 aaPredicted RBP20.33■□□□□ 0.84
CLN3-205ENST00000359984 ECHS1P30084 290 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 EML3Q32P44 896 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 TRIM68Q6AZZ1 485 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 ZDHHC24Q6UX98 284 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 VITQ6UXI7 678 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 ZNF783Q6ZMS7 281 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 GSPT2Q8IYD1 628 aaKnown RBP20.33■□□□□ 0.84
CLN3-205ENST00000359984 FIBINQ8TAL6 211 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 FATE1Q969F0 183 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 LRRC45Q96CN5 670 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 ACE2Q9BYF1 805 aaPredicted RBP20.33■□□□□ 0.84
CLN3-205ENST00000359984 SP110Q9HB58 689 aa20.33■□□□□ 0.84
CLN3-205ENST00000359984 GRXCR2A6NFK2 248 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 OPHN1O60890 802 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 IFNAR2P48551 515 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 IFI35P80217 286 aaPredicted RBP20.32■□□□□ 0.84
CLN3-205ENST00000359984 IL10RBQ08334 325 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 HLTFQ14527 1009 aaKnown RBP eCLIP20.32■□□□□ 0.84
CLN3-205ENST00000359984 ANO4Q32M45 955 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 TEX44Q53QW1 395 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 IZUMO3Q5VZ72 239 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 IL31Q6EBC2 164 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 MAML1Q92585 1016 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 E2F7Q96AV8 911 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 ZFYVE19Q96K21 471 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 GUCD1Q96NT3 240 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 PLA2G2FQ9BZM2 168 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 MUC3BQ9H195 1237 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 NEUROG2Q9H2A3 272 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 ATP13A1Q9HD20 1204 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 ZNF446Q9NWS9 450 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 MARK1Q9P0L2 795 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 OR51B4Q9Y5P0 310 aa20.32■□□□□ 0.84
CLN3-205ENST00000359984 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.31■□□□□ 0.84
CLN3-205ENST00000359984 DNALI1O14645 258 aaPredicted RBP20.31■□□□□ 0.84
CLN3-205ENST00000359984 KDELR3O43731 214 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 PRAMEF11O60813 436 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 KCNA5P22460 613 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 CSKP41240 450 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 ITGA8P53708 1063 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 PLTPP55058 493 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 DHCR24Q15392 516 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 PARM1Q6UWI2 310 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 C4orf22Q6V702 233 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 ARHGEF18Q6ZSZ5 1173 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 PID1Q7Z2X4 250 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 CCDC117Q8IWD4 279 aaPredicted RBP20.31■□□□□ 0.84
CLN3-205ENST00000359984 EIF1ADQ8N9N8 165 aaKnown RBP20.31■□□□□ 0.84
CLN3-205ENST00000359984 USP33Q8TEY7 942 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 ART4Q93070 314 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 ALG14Q96F25 216 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 ZNF419Q96HQ0 510 aaPredicted RBP20.31■□□□□ 0.84
CLN3-205ENST00000359984 VAT1Q99536 393 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 IL12RB2Q99665 862 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 FEM1AQ9BSK4 669 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 UBE2ZQ9H832 354 aaPredicted RBP20.31■□□□□ 0.84
CLN3-205ENST00000359984 ZDHHC18Q9NUE0 388 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 KLHL8Q9P2G9 620 aaPredicted RBP20.31■□□□□ 0.84
CLN3-205ENST00000359984 TPX2Q9ULW0 747 aaKnown RBP20.31■□□□□ 0.84
CLN3-205ENST00000359984 XIRP2A4UGR9 3374 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 DENND4AQ7Z401 1863 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 CHD5Q8TDI0 1954 aa20.31■□□□□ 0.84
CLN3-205ENST00000359984 ZBTB24O43167 697 aaPredicted RBP20.3■□□□□ 0.84
CLN3-205ENST00000359984 METTL18O95568 372 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 CYP17A1P05093 508 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 TYRP14679 529 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 ARSAP15289 507 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 GLDCP23378 1020 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 ETFBP38117 255 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 OXCT1P55809 520 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 CALCOCO2Q13137 446 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 BRD3Q15059 726 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 LEKR1Q6ZMV7 388 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 MFSD6LQ8IWD5 586 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 CNTD1Q8N815 330 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 FBXO25Q8TCJ0 367 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 ELSPBP1Q96BH3 223 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 TEKT5Q96M29 485 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 AGAP3Q96P47 875 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 KXD1Q9BQD3 176 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 FAM83CQ9BQN1 747 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 PDFQ9HBH1 243 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 RAB6BQ9NRW1 208 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 THG1LQ9NWX6 298 aaKnown RBP20.3■□□□□ 0.84
CLN3-205ENST00000359984 ANAPC5Q9UJX4 755 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 TRHDEQ9UKU6 1024 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 SHROOM3Q8TF72 1996 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms