RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 YY1P25490 414 aa21.23■□□□□ 0.99
CCDC88B-203ENST00000359902 TRIM32Q13049 653 aa21.23■□□□□ 0.99
CCDC88B-203ENST00000359902 MPP3Q13368 585 aa21.23■□□□□ 0.99
CCDC88B-203ENST00000359902 MAPRE1Q15691 268 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-203ENST00000359902 SAPCD2Q86UD0 394 aa21.23■□□□□ 0.99
CCDC88B-203ENST00000359902 ARHGAP12Q8IWW6 846 aa21.23■□□□□ 0.99
CCDC88B-203ENST00000359902 THEM5Q8N1Q8 247 aa21.23■□□□□ 0.99
CCDC88B-203ENST00000359902 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.23■□□□□ 0.99
CCDC88B-203ENST00000359902 PNPOQ9NVS9 261 aa21.23■□□□□ 0.99
CCDC88B-203ENST00000359902 A0A096LPK6 155 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 PRR5-ARHGAP8B1AHC4 643 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 SEPT4O43236 478 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 MPOP05164 745 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 PGM1P36871 562 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 HARS2P49590 506 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 CDK7P50613 346 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 ARHGAP8P85298 464 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 KPNB1Q14974 876 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 DLG2Q15700 870 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 TBCCQ15814 346 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 ARTNQ5T4W7 220 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 MAVSQ7Z434 540 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 CLEC14AQ86T13 490 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 TNS4Q8IZW8 715 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 GPATCH11Q8N954 259 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 SUSD3Q96L08 255 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 STN1Q9H668 368 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 IARS2Q9NSE4 1012 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 ABCC13Q9NSE7 274 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 TDRD15B5MCY1 1934 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 AP3B1O00203 1094 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 PSMD3O43242 534 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 PAGE1O75459 146 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 PAX3P23760 479 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 CSE1LP55060 971 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 ABCE1P61221 599 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 KDSRQ06136 332 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 ITGA9Q13797 1035 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 UBAP2LQ14157 1087 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 RCN2Q14257 317 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 KCNA10Q16322 511 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 BRMS1LQ5PSV4 323 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 LINC00523Q86TU6 105 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 RBM15BQ8NDT2 890 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 ACVR1CQ8NER5 493 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 SPATA22Q8NHS9 363 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 URGCPQ8TCY9 931 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 PPP4R1Q8TF05 950 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 ZNF419Q96HQ0 510 aaPredicted RBP21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 UROC1Q96N76 676 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 KIFC1Q9BW19 673 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 SFMBT1Q9UHJ3 866 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 SORCS3Q9UPU3 1222 aa21.22■□□□□ 0.99
CCDC88B-203ENST00000359902 TNFRSF10BO14763 440 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 TIMM44O43615 452 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 MYCNP04198 464 aaPredicted RBP21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 SLC5A3P53794 718 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 IRF9Q00978 393 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 TSPY1Q01534 308 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 ACSBG2Q5FVE4 666 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 BTBD8Q5XKL5 378 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 WDR60Q8WVS4 1066 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 SPECC1L-ADORA2AF8WAN1 911 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 GOLGA8TH3BQL2 631 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 C2P06681 752 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 HOXC13P31276 330 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 RABGAP1LQ5R372 815 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 MANEALQ5VSG8 457 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 SCD5Q86SK9 330 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 CASP10Q92851 521 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 AAR2Q9Y312 384 aaKnown RBP21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 LRRC42Q9Y546 428 aa21.21■□□□□ 0.99
CCDC88B-203ENST00000359902 PTPRDP23468 1912 aa21.2■□□□□ 0.99
CCDC88B-203ENST00000359902 G3V2L1 256 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 ZNF195O14628 629 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 MSI1O43347 362 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 MAFKO60675 156 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 MAGEC1O60732 1142 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 SLC10A3P09131 477 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 AOC1P19801 751 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 DNAJB2P25686 324 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 GRIK1P39086 918 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 RAP1GDS1P52306 607 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 SPATA2LQ8IUW3 424 aaPredicted RBP21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 ATPAF2Q8N5M1 289 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 VPS39Q96JC1 886 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 FCRL2Q96LA5 508 aaPredicted RBP21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 SLC39A8Q9C0K1 460 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 SMOC2Q9H3U7 446 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 PLA2G4CQ9UP65 541 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 APOBEC2Q9Y235 224 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 SEC23IPQ9Y6Y8 1000 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 NLRC5Q86WI3 1866 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 MT-CYBP00156 380 aaPredicted RBP21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 ALOX15P16050 662 aaPredicted RBP21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 TYMPP19971 482 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 CCR1P32246 355 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 PTDSS1P48651 473 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 FLT3LGP49771 235 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 IDH3AP50213 366 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms