RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CHADO15335 359 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 MLYCDO95822 493 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 FTH1P02794 183 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ZNF286BP0CG31 522 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 PSEN2P49810 448 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 HERVK_113P62684 666 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 PCID2Q5JVF3 399 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 EIF3MQ7L2H7 374 aaKnown RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 ZNF571Q7Z3V5 609 aaPredicted RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 ZNF671Q8TAW3 534 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 HASPINQ8TF76 798 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 SLC38A2Q96QD8 506 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 SEPHS2Q99611 448 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ABHD16BQ9H3Z7 469 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 RNPEPQ9H4A4 650 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 RIOX1Q9H6W3 641 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 L2HGDHQ9H9P8 463 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 CNGB3Q9NQW8 809 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ZNF624Q9P2J8 865 aaPredicted RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 ANAPC2Q9UJX6 822 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 IQSEC2Q5JU85 1478 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 A0A087WXM4 84 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 IRGMA1A4Y4 181 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 APOC4-APOC2K7ER74 178 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 PDHXO00330 501 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 INPP4BO15327 924 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 ATP9AO75110 1047 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 KLHL18O94889 574 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 FGF19O95750 216 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 APOC2P02655 101 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 INSRRP14616 1297 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 TPP2P29144 1249 aaPredicted RBP6.56□□□□□ -1.36
UPF2-201ENST00000356352 ELK3P41970 407 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 RFX5P48382 616 aaPredicted RBP6.56□□□□□ -1.36
UPF2-201ENST00000356352 CASP4P49662 377 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 FKBP1AP62942 108 aaKnown RBP6.56□□□□□ -1.36
UPF2-201ENST00000356352 CDK16Q00536 496 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 ITGADQ13349 1161 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 SQLEQ14534 574 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 SV2AQ7L0J3 742 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 RD3Q7Z3Z2 195 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 DSELQ8IZU8 1212 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 DHRSXQ8N5I4 330 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 STAG3L4Q8TBR4 150 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 PHF21BQ96EK2 531 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 MRPL17Q9NRX2 175 aaKnown RBP6.56□□□□□ -1.36
UPF2-201ENST00000356352 ARL15Q9NXU5 204 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 KCNK4Q9NYG8 393 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 PCDHGC5Q9Y5F6 944 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.56□□□□□ -1.36
UPF2-201ENST00000356352 SMNDC1O75940 238 aaKnown RBP eCLIP6.56□□□□□ -1.36
UPF2-201ENST00000356352 ATP6V1G2O95670 118 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 HLA-DQA2P01906 255 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 RPL14P50914 215 aaKnown RBP6.56□□□□□ -1.36
UPF2-201ENST00000356352 RGS1Q08116 209 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 BMPR2Q13873 1038 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 C9orf131Q5VYM1 1079 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 IQSEC1Q6DN90 963 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 TMC5Q6UXY8 1006 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 PACS1Q6VY07 963 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 BNIPLQ7Z465 357 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 DEFB128Q7Z7B8 93 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 CROCCP3Q8IVE0 287 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 IZUMO1Q8IYV9 350 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 C8orf59Q8N0T1 100 aaPredicted RBP6.56□□□□□ -1.36
UPF2-201ENST00000356352 DEPDC4Q8N2C3 294 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 ZNF276Q8N554 614 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 SLC5A5Q92911 643 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 C18orf25Q96B23 403 aaPredicted RBP6.56□□□□□ -1.36
UPF2-201ENST00000356352 CELF6Q96J87 481 aaKnown RBP6.56□□□□□ -1.36
UPF2-201ENST00000356352 C1orf50Q9BV19 199 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 MFSD1Q9H3U5 465 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 TMEM134Q9H6X4 195 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 CDHR5Q9HBB8 845 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 XPNPEP3Q9NQH7 507 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 SETD4Q9NVD3 440 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 FRMPD4Q14CM0 1322 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 LINC00854A0A1B0GVQ3 168 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 UBE2QL1A1L167 161 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 TSPAN3O60637 253 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 POMCP01189 267 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 LTA4HP09960 611 aaKnown RBP6.56□□□□□ -1.36
UPF2-201ENST00000356352 YBX3P16989 372 aaKnown RBP eCLIP6.56□□□□□ -1.36
UPF2-201ENST00000356352 ACADLP28330 430 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 RCVRNP35243 200 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 ALDH5A1P51649 535 aaPredicted RBP6.56□□□□□ -1.36
UPF2-201ENST00000356352 IKBKEQ14164 716 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 TXNDC11Q6PKC3 985 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 IL27RAQ6UWB1 636 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 CAMK1DQ8IU85 385 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 KATNAL2Q8IYT4 538 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 EMC1Q8N766 993 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 ACER1Q8TDN7 264 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 DNAJB3Q8WWF6 145 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 RNF145Q96MT1 663 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 OMDQ99983 421 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 RTFDC1Q9BY42 306 aaPredicted RBP6.56□□□□□ -1.36
UPF2-201ENST00000356352 CLN6Q9NWW5 311 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 RHBDL2Q9NX52 303 aa6.56□□□□□ -1.36
UPF2-201ENST00000356352 ZNF510Q9Y2H8 683 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms