RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 SMYD1Q8NB12 490 aa16.19■□□□□ 0.18
HMGA1-202ENST00000347617 TRPV1Q8NER1 839 aa16.19■□□□□ 0.18
HMGA1-202ENST00000347617 TSPAN14Q8NG11 270 aa16.19■□□□□ 0.18
HMGA1-202ENST00000347617 KBTBD7Q8WVZ9 684 aa16.19■□□□□ 0.18
HMGA1-202ENST00000347617 ABTB1Q969K4 478 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-202ENST00000347617 VPS50Q96JG6 964 aa16.19■□□□□ 0.18
HMGA1-202ENST00000347617 XYLT2Q9H1B5 865 aa16.19■□□□□ 0.18
HMGA1-202ENST00000347617 XPNPEP3Q9NQH7 507 aa16.19■□□□□ 0.18
HMGA1-202ENST00000347617 EPS15L1Q9UBC2 864 aa16.19■□□□□ 0.18
HMGA1-202ENST00000347617 BCAS2O75934 225 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-202ENST00000347617 CXCL8P10145 99 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 GALK1P51570 392 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 CRYBB1P53674 252 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-202ENST00000347617 MYL6P60660 151 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 SEMA5AQ13591 1074 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 PDE1CQ14123 709 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-202ENST00000347617 DEFB115Q30KQ5 88 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 ZNF699Q32M78 642 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 IRAK1BP1Q5VVH5 260 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 SLC27A1Q6PCB7 646 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 PATL1Q86TB9 770 aaKnown RBP16.18■□□□□ 0.18
HMGA1-202ENST00000347617 RSPH3Q86UC2 560 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 C10orf107Q8IVU9 208 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 CHERPQ8IWX8 916 aaKnown RBP16.18■□□□□ 0.18
HMGA1-202ENST00000347617 TTC39CQ8N584 583 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 TRIML2Q8N7C3 387 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 ISL2Q96A47 359 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 CCT7Q99832 543 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.18■□□□□ 0.18
HMGA1-202ENST00000347617 APPL1Q9UKG1 709 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 ANK1P16157 1881 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 CASP8AP2Q9UKL3 1982 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 SLCO1B7G3V0H7 640 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 TPP1O14773 563 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 ZNF189O75820 626 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-202ENST00000347617 BMP10O95393 424 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 PIK3R1P27986 724 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 RBL1P28749 1068 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 PSMD7P51665 324 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 SP3Q02447 781 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 CBX3Q13185 183 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 PDAP1Q13442 181 aaKnown RBP16.18■□□□□ 0.18
HMGA1-202ENST00000347617 KIZQ2M2Z5 673 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 SLC44A4Q53GD3 710 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 NOTUMQ6P988 496 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 KLHL35Q6PF15 583 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 POTEHQ6S545 545 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 ZNF534Q76KX8 674 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 HACE1Q8IYU2 909 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 PHTF2Q8N3S3 785 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 C7orf31Q8N865 590 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 TERB1Q8NA31 727 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 TRIB2Q92519 343 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 CPB2Q96IY4 423 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 ZNF670Q9BS34 389 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 OSBPL6Q9BZF3 934 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 PRDM16Q9HAZ2 1276 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 TCF7L2Q9NQB0 619 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 EIF2B3Q9NR50 452 aaKnown RBP16.18■□□□□ 0.18
HMGA1-202ENST00000347617 IGSF9Q9P2J2 1179 aa16.18■□□□□ 0.18
HMGA1-202ENST00000347617 LOC100653049A0A140TA62 436 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 TMEM221A6NGB7 291 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 DPYSL4O14531 572 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 TADA2AO75478 443 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 KRT34O76011 436 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 SORBS2O94875 1100 aaKnown RBP16.17■□□□□ 0.18
HMGA1-202ENST00000347617 HSPA4LO95757 839 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 ALDOAP04075 364 aaKnown RBP16.17■□□□□ 0.18
HMGA1-202ENST00000347617 APOA4P06727 396 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 CD19P15391 556 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 KCNA4P22459 653 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 HOXD10P28358 340 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 NR2C2P49116 596 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 NUDT2P50583 147 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 PHEXP78562 749 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 BEX3Q00994 111 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 TRMT10BQ6PF06 316 aaKnown RBP16.17■□□□□ 0.18
HMGA1-202ENST00000347617 IYDQ6PHW0 289 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 CATSPER4Q7RTX7 472 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 TMEM192Q8IY95 271 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 DSELQ8IZU8 1212 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 CXorf38Q8TB03 319 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 RIN3Q8TB24 985 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 PDCD6IPQ8WUM4 868 aaKnown RBP16.17■□□□□ 0.18
HMGA1-202ENST00000347617 BCO2Q9BYV7 579 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 COG4Q9H9E3 785 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 CYP3A43Q9HB55 503 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 PNPLA3Q9NST1 481 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 VTI1BQ9UEU0 232 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 GABRQQ9UN88 632 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 MYRFQ9Y2G1 1151 aa16.17■□□□□ 0.18
HMGA1-202ENST00000347617 hCG_2014768A0A024R1R8 64 aa16.16■□□□□ 0.18
HMGA1-202ENST00000347617 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.16■□□□□ 0.18
HMGA1-202ENST00000347617 TREHO43280 583 aa16.16■□□□□ 0.18
HMGA1-202ENST00000347617 H6PDO95479 791 aa16.16■□□□□ 0.18
HMGA1-202ENST00000347617 GNRH1P01148 92 aa16.16■□□□□ 0.18
HMGA1-202ENST00000347617 P4HA1P13674 534 aa16.16■□□□□ 0.18
HMGA1-202ENST00000347617 PGAM1P18669 254 aa16.16■□□□□ 0.18
HMGA1-202ENST00000347617 MAGEA12P43365 314 aa16.16■□□□□ 0.18
HMGA1-202ENST00000347617 ASPAP45381 313 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms