RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CTAGE3PQ8IX95 158 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 DNAAF3Q8N9W5 541 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 GSDMBQ8TAX9 411 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 SP7Q8TDD2 431 aaPredicted RBP13.67□□□□□ -0.22
HMGB1-202ENST00000339872 DCAKDQ8WVC6 231 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 HERVK_113Q902F9 699 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 APOL2Q9BQE5 337 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 RABEP2Q9H5N1 569 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 SP110Q9HB58 689 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 SMPD4Q9NXE4 827 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 J3KR12 359 aa13.66□□□□□ -0.22
HMGB1-202ENST00000339872 LRG1P02750 347 aa13.66□□□□□ -0.22
HMGB1-202ENST00000339872 KLKB1P03952 638 aa13.66□□□□□ -0.22
HMGB1-202ENST00000339872 MBL2P11226 248 aaPredicted RBP13.66□□□□□ -0.22
HMGB1-202ENST00000339872 MAPKAPK2P49137 400 aa13.66□□□□□ -0.22
HMGB1-202ENST00000339872 POLD3Q15054 466 aaPredicted RBP13.66□□□□□ -0.22
HMGB1-202ENST00000339872 SPATA22Q8NHS9 363 aa13.66□□□□□ -0.22
HMGB1-202ENST00000339872 KLHL5Q96PQ7 755 aa13.66□□□□□ -0.22
HMGB1-202ENST00000339872 KLF16Q9BXK1 252 aaPredicted RBP13.66□□□□□ -0.22
HMGB1-202ENST00000339872 LRRC40Q9H9A6 602 aa13.66□□□□□ -0.22
HMGB1-202ENST00000339872 GLOD4Q9HC38 313 aa13.66□□□□□ -0.22
HMGB1-202ENST00000339872 ACTL7BQ9Y614 415 aa13.66□□□□□ -0.22
HMGB1-202ENST00000339872 TRDMT1O14717 391 aaKnown RBP13.65□□□□□ -0.22
HMGB1-202ENST00000339872 F11P03951 625 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 INHBAP08476 426 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 ERVFC1P60507 584 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 PLPP4Q5VZY2 271 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 TRMT10BQ6PF06 316 aaKnown RBP13.65□□□□□ -0.22
HMGB1-202ENST00000339872 PPM1NQ8N819 430 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 SLC44A1Q8WWI5 657 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 ARNTL2Q8WYA1 636 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 PABPC5Q96DU9 382 aaKnown RBP13.65□□□□□ -0.22
HMGB1-202ENST00000339872 FCRL5Q96RD9 977 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 CYP2S1Q96SQ9 504 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 TRABDQ9H4I3 376 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 KIF9Q9HAQ2 790 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 IL21Q9HBE4 155 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 PPANQ9NQ55 473 aaKnown RBP13.65□□□□□ -0.22
HMGB1-202ENST00000339872 CASS4Q9NQ75 786 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 INTS9Q9NV88 658 aaKnown RBP13.65□□□□□ -0.22
HMGB1-202ENST00000339872 SAMD15Q9P1V8 674 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 ZFP37Q9Y6Q3 630 aaPredicted RBP13.65□□□□□ -0.22
HMGB1-202ENST00000339872 DENND4CQ5VZ89 1909 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 CACNG3O60359 315 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 MT-CYBP00156 380 aaPredicted RBP13.65□□□□□ -0.22
HMGB1-202ENST00000339872 C1QAP02745 245 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 C8AP07357 584 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 PGAM1P18669 254 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 PRKCHP24723 683 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 BMPR1AP36894 532 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 NUMBP49757 651 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 PARP15Q460N3 678 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 PABPC1LQ4VXU2 614 aaKnown RBP13.65□□□□□ -0.22
HMGB1-202ENST00000339872 RABGAP1LQ5R372 815 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 NAPEPLDQ6IQ20 393 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 ANKRD42Q8N9B4 389 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 MGARPQ8TDB4 240 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 WBP2Q969T9 261 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 PRICKLE1Q96MT3 831 aaPredicted RBP13.65□□□□□ -0.22
HMGB1-202ENST00000339872 SLC22A12Q96S37 553 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 AAR2Q9Y312 384 aaKnown RBP13.65□□□□□ -0.22
HMGB1-202ENST00000339872 ASB3Q9Y575 518 aa13.65□□□□□ -0.22
HMGB1-202ENST00000339872 CXorf49A8MYA2 514 aaPredicted RBP13.64□□□□□ -0.23
HMGB1-202ENST00000339872 ANXA9O76027 345 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 PEX11BO96011 259 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 GABRR2P28476 465 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 RPS24P62847 133 aaKnown RBP13.64□□□□□ -0.23
HMGB1-202ENST00000339872 C5orf22Q49AR2 442 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 STEAP4Q687X5 459 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 TXNDC8Q6A555 127 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 LILRA6Q6PI73 481 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 CCDC149Q6ZUS6 474 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 LRRC6Q86X45 466 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 CCNJLQ8IV13 435 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 C4orf33Q8N1A6 199 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 ARL14EPQ8N8R7 260 aaPredicted RBP13.64□□□□□ -0.23
HMGB1-202ENST00000339872 KREMEN2Q8NCW0 462 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 PHOSPHO2Q8TCD6 241 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 NAT9Q9BTE0 207 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 EMILIN2Q9BXX0 1053 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 SMYD2Q9NRG4 433 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 BFARQ9NZS9 450 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 SENP1Q9P0U3 644 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 AGO1Q9UL18 857 aaKnown RBP13.64□□□□□ -0.23
HMGB1-202ENST00000339872 MIA3Q5JRA6 1907 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.64□□□□□ -0.23
HMGB1-202ENST00000339872 A0A1W2PPM1 405 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 HIDE1A8MVS5 230 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 PSMD3O43242 534 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 ACVRL1P37023 503 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 RENBPP51606 427 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 SEC24CP53992 1094 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 YBEYP58557 167 aaPredicted RBP13.64□□□□□ -0.23
HMGB1-202ENST00000339872 SMAD3P84022 425 aaKnown RBP13.64□□□□□ -0.23
HMGB1-202ENST00000339872 CYP4F8P98187 520 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 DMTNQ08495 405 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 SLC10A7Q0GE19 358 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 SERINC3Q13530 473 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 HNRNPDQ14103 355 aaKnown RBP13.64□□□□□ -0.23
HMGB1-202ENST00000339872 CRYMQ14894 314 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms