RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 DCLK2Q8N568 766 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 SLC25A41Q8N5S1 370 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 PCYOX1LQ8NBM8 494 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 OSCP1Q8WVF1 389 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 TMEM159Q96B96 161 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 COPS8Q99627 209 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 VPS51Q9UID3 782 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 MTO1Q9Y2Z2 717 aaKnown RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 ILVBLA1L0T0 632 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 CCDC78A2IDD5 438 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 CFAP73A6NFT4 308 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 TACR2P21452 398 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 LPOP22079 712 aaPredicted RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 SLC11A1P49279 550 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 CLCN5P51795 746 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 CDH4P55283 916 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 UBE3AQ05086 875 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 DNAJB7Q7Z6W7 309 aaPredicted RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 NLRP14Q86W24 1093 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 ARID3BQ8IVW6 561 aaPredicted RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 MYO1HQ8N1T3 1032 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 Q9H521 79 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 STN1Q9H668 368 aaKnown RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 ETNK2Q9NVF9 386 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 DZANK1Q9NVP4 752 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 UBAP1Q9NZ09 502 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 TNPO3Q9Y5L0 923 aaKnown RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 MAP2K7O14733 419 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 PRMT5O14744 637 aaPredicted RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 C1RP00736 705 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 KRT6AP02538 564 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 KRT6BP04259 564 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 MYL2P10916 166 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 KRT6CP48668 564 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 TTPAP49638 278 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 ZNF132P52740 706 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 ART3Q13508 389 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 ZDHHC20Q5W0Z9 365 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 FBXL19Q6PCT2 694 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 RASSF3Q86WH2 238 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 MCOLN3Q8TDD5 553 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 SMOC2Q9H3U7 446 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 STOML1Q9UBI4 398 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 SLC27A5Q9Y2P5 690 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 TRPC5OSA6NMA1 111 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 RIPK2O43353 540 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 SRP72O76094 671 aaKnown RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 ATP6V0D1P61421 351 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 IL10RBQ08334 325 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 PRKAA1Q13131 559 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 RCN2Q14257 317 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 EIF4HQ15056 248 aaKnown RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 TRIM60Q495X7 471 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 RALGPS1Q5JS13 557 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 MFSD5Q6N075 450 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 SLC22A9Q8IVM8 553 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 SH2D3CQ8N5H7 860 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 ATL1Q8WXF7 558 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 BHMTQ93088 406 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 CERS2Q96G23 380 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 RSRC1Q96IZ7 334 aaKnown RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 AGO1Q9UL18 857 aaKnown RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 NAALADL1Q9UQQ1 740 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 SPECC1L-ADORA2AF8WAN1 911 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 H2AFYO75367 372 aaKnown RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 CYP11A1P05108 521 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 PFKLP17858 780 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 POU6F1Q14863 301 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 ANKS1BQ7Z6G8 1248 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 STRA8Q7Z7C7 330 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 DNAAF5Q86Y56 855 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 KLHDC9Q8NEP7 349 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 LPCAT1Q8NF37 534 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 PCDH19Q8TAB3 1148 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 CSGALNACT1Q8TDX6 532 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 PPP1R13LQ8WUF5 828 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 USP6NLQ92738 828 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 KCNK16Q96T55 309 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 LGMNQ99538 433 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 HAUS8Q9BT25 410 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 RMI1Q9H9A7 625 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 NMRAL1Q9HBL8 299 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 RNF19AQ9NV58 838 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 PCMTD2Q9NV79 361 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 MTRRQ9UBK8 725 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 CORO1CQ9ULV4 474 aaPredicted RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 SCN9AQ15858 1988 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 ACACBO00763 2458 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 PTGESO14684 152 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 DIAPH2O60879 1101 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 DDX6P26196 483 aaKnown RBP eCLIP6.98□□□□□ -1.297e-8■■■■■ 33.3
SF3B1-201ENST00000335508 AUHQ13825 339 aaKnown RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 HSP90AA5PQ58FG0 334 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 OLFML1Q6UWY5 402 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 TTC7BQ86TV6 843 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 BEND7Q8N7W2 519 aaPredicted RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 SLC22A17Q8WUG5 538 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 ZMAT2Q96NC0 199 aaKnown RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 SIKE1Q9BRV8 207 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms