RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZNF91Q05481 1191 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 IL13RA2Q14627 380 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 TRIP6Q15654 476 aaKnown RBP3.65□□□□□ -1.83
HMGB1-201ENST00000326004 SUPT20HL1Q3ZLR7 823 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 ALG10Q5BKT4 473 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 ALG10BQ5I7T1 473 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 TTC39AQ5SRH9 613 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 MORN5Q5VZ52 161 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 DPY19L2P1Q6NXN4 242 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 ZNF793Q6ZN11 406 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 RNF144BQ7Z419 303 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 IGFN1Q86VF2 1251 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 FAM185AQ8N0U4 392 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 TSPYL6Q8N831 410 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 ZNF366Q8N895 744 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 PRSS3P2Q8NHM4 247 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 RFWD2Q8NHY2 731 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 WIPF2Q8TF74 440 aaPredicted RBP3.65□□□□□ -1.83
HMGB1-201ENST00000326004 IP6K1Q92551 441 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 TEFMQ96QE5 360 aaKnown RBP3.65□□□□□ -1.83
HMGB1-201ENST00000326004 SEC62Q99442 399 aaKnown RBP3.65□□□□□ -1.83
HMGB1-201ENST00000326004 IFT27Q9BW83 186 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 FRMD8Q9BZ67 464 aaPredicted RBP3.65□□□□□ -1.83
HMGB1-201ENST00000326004 UNC45AQ9H3U1 944 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 ACAD9Q9H845 621 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 TTC12Q9H892 705 aaPredicted RBP3.65□□□□□ -1.83
HMGB1-201ENST00000326004 JMJD4Q9H9V9 463 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 IL21RQ9HBE5 538 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 UBN1Q9NPG3 1134 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 TLR8Q9NR97 1041 aaKnown RBP3.65□□□□□ -1.83
HMGB1-201ENST00000326004 UPB1Q9UBR1 384 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 FBXO40Q9UH90 709 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 FBXO4Q9UKT5 387 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 DHDHQ9UQ10 334 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 LAMP3Q9UQV4 416 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 OSGIN2Q9Y236 505 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 ZNF804BA4D1E1 1349 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 ZMYM2Q9UBW7 1377 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 TRBV5-3A0A0A0MS03 114 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 TCRBV7S3A2A0A539 114 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 OR6C68A6NDL8 312 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 C17orf100A8MU93 164 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 KCNU1A8MYU2 1149 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 FOXO6A8MYZ6 492 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 KIF1CO43896 1103 aaKnown RBP3.64□□□□□ -1.83
HMGB1-201ENST00000326004 UGDHO60701 494 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 NEURL1O76050 574 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 HNRNPA1P09651 372 aaKnown RBP eCLIP3.64□□□□□ -1.83
HMGB1-201ENST00000326004 DDIT3P35638 169 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 MTNR1AP48039 350 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 SSBP2P81877 361 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-201ENST00000326004 PMPCAQ10713 525 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 GPR68Q15743 365 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 BAK1Q16611 211 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 AP5B1Q2VPB7 878 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 MIDNQ504T8 468 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 MTX3Q5HYI7 312 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 SH2D4BQ5SQS7 431 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 TMEM268Q5VZI3 342 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 ANKRD13BQ86YJ7 626 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 DDIASQ8IXT1 998 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 TMEM217Q8N7C4 229 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 SCAIQ8N9R8 606 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 TEX19Q8NA77 164 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 SLC44A5Q8NCS7 719 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 IGFBPL1Q8WX77 278 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 ST8SIA4Q92187 359 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 KAT2AQ92830 837 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 FUZQ9BT04 418 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 PHF7Q9BWX1 381 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-201ENST00000326004 MROH8Q9H579 483 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 ACTR5Q9H9F9 607 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-201ENST00000326004 RNF146Q9NTX7 359 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 UTS2RQ9UKP6 389 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 HSF4Q9ULV5 492 aa3.64□□□□□ -1.83
HMGB1-201ENST00000326004 CACNA1IQ9P0X4 2223 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 MST1RQ04912 1400 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 GAGE10A6NGK3 116 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 A6NLC8 198 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 TLX3O43711 291 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-201ENST00000326004 DDAH2O95865 285 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 CHRM4P08173 479 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 CD53P19397 219 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 LIFRP42702 1097 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 MMP13P45452 471 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 NAA25Q14CX7 972 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 NFIL3Q16649 462 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 C10orf25Q5T742 122 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 ZNF626Q68DY1 528 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 AAGABQ6PD74 315 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 SLC2A7Q6PXP3 512 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 KDELC2Q7Z4H8 507 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 ADGRG6Q86SQ4 1221 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 SETD9Q8NE22 299 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 TNIP2Q8NFZ5 429 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 MPLKIPQ8TAP9 179 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 ZCCHC10Q8TBK6 192 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 HDAC7Q8WUI4 952 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 FAR1Q8WVX9 515 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 RAB40AQ8WXH6 277 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms