RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CLNKQ7Z7G1 428 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 TRABD2AQ86V40 505 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 TMEM161BQ8NDZ6 487 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 DNAJB3Q8WWF6 145 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 BAP1Q92560 729 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 APOL2Q9BQE5 337 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 ARL8BQ9NVJ2 186 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 CRNNQ9UBG3 495 aaPredicted RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 ENOPH1Q9UHY7 261 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 SH3BP1Q9Y3L3 701 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 NCANO14594 1321 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 TRIM43BA6NCK2 446 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 CCDC154A6NI56 674 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 CD3EAPO15446 510 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 CRABP2P29373 138 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 TKTP29401 623 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 TKTL1P51854 596 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 CDH8P55286 799 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 PSME3P61289 254 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 MFSD5Q6N075 450 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 ZNF410Q86VK4 478 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 FITM2Q8N6M3 262 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 GSTCDQ8NEC7 633 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 ADCY4Q8NFM4 1077 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 RP9Q8TA86 221 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 FAM45AQ8TCE6 357 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 PRRG3Q9BZD7 231 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 S100A14Q9HCY8 104 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 RPRD1BQ9NQG5 326 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 TRNAU1APQ9NX07 287 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 CDH9Q9ULB4 789 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 PSMD13Q9UNM6 376 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 AGPSO00116 658 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 S100A9P06702 114 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 SNHG28P0DPA3 235 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 ACAT1P24752 427 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 GRIA3P42263 894 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 CD151P48509 253 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 SLC11A2P49281 568 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 GSCP56915 257 aaPredicted RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 MSLNQ13421 630 aaPredicted RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 NR6A1Q15406 480 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 NFIL3Q16649 462 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 TTLL9Q3SXZ7 439 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 EGFLAMQ63HQ2 1017 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 MZT2BQ6NZ67 158 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 C16orf46Q6P387 395 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 MIB1Q86YT6 1006 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 PTCD3Q96EY7 689 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 HPS4Q9NQG7 708 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 NCF1BA6NI72 391 aaPredicted RBP11.68□□□□□ -0.54
VPS39-201ENST00000318006 NCF1CA8MVU1 366 aaPredicted RBP11.68□□□□□ -0.54
VPS39-201ENST00000318006 MLNP12872 115 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 NCF1P14598 390 aaPredicted RBP11.68□□□□□ -0.54
VPS39-201ENST00000318006 CYP2F1P24903 491 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 CHKAP35790 457 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 NUP62P37198 522 aaPredicted RBP11.68□□□□□ -0.54
VPS39-201ENST00000318006 SPIRE1Q08AE8 756 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 UBAP2LQ14157 1087 aaKnown RBP11.68□□□□□ -0.54
VPS39-201ENST00000318006 DPYSL3Q14195 570 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 TSNQ15631 228 aaKnown RBP11.68□□□□□ -0.54
VPS39-201ENST00000318006 HYIQ5T013 277 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 FAM228AQ86W67 206 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 ECHDC2Q86YB7 292 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 ZDHHC17Q8IUH5 632 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 MAB21L3Q8N8X9 362 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 IL31RAQ8NI17 732 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 PHF21BQ96EK2 531 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 TCF12Q99081 682 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 PTTG2Q9NZH5 202 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.68□□□□□ -0.54
VPS39-201ENST00000318006 H3BNX3 289 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 AREL1O15033 823 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 VPS4BO75351 444 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 ADRB2P07550 413 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 ZSCAN5DPP0CG00 497 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 SLC16A1P53985 500 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 NAA20P61599 178 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 BNC1Q01954 994 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 ACVR2BQ13705 512 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 FAM126BQ8IXS8 530 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 ZNF276Q8N554 614 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 FBXO32Q969P5 355 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 CDCA5Q96FF9 252 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 SYT15Q9BQS2 421 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 GPR63Q9BZJ6 419 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 RGS18Q9NS28 235 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 SQORQ9Y6N5 450 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 ROBO3Q96MS0 1386 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 ZMPSTE24O75844 475 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 MICAL2O94851 1124 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 GLRA2P23416 452 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 ST8SIA6P61647 398 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 SPIDRQ14159 915 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 BMT2Q1RMZ1 405 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 LPCAT4Q643R3 524 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 TIGD7Q6NT04 549 aaPredicted RBP11.68□□□□□ -0.54
VPS39-201ENST00000318006 IKBIPQ70UQ0 350 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 CYP4Z1Q86W10 505 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 KCNMB4Q86W47 210 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms