RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CSPG5O95196 566 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 HLA-DRAP01903 254 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 GP5P40197 560 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ABCE1P61221 599 aaKnown RBP6.52□□□□□ -1.37
VPS35-201ENST00000299138 BNIP2Q12982 314 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 GRM2Q14416 872 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ACSBG2Q5FVE4 666 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 BEST2Q8NFU1 509 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 TSPEARQ8WU66 669 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 SLC20A1Q8WUM9 679 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ERLEC1Q96DZ1 483 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 APOL4Q9BPW4 351 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ZNF670Q9BS34 389 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 SHCBP1LQ9BZQ2 653 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 PCDH18Q9HCL0 1135 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 SLC9A8Q9Y2E8 581 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 LOC100653049A0A140TA62 436 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ARHGEF37A1IGU5 675 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 TNPO2O14787 897 aaKnown RBP6.52□□□□□ -1.37
VPS35-201ENST00000299138 ADCY6O43306 1168 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 DNAJA2O60884 412 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 KRT34O76011 436 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 SGPL1O95470 568 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 HMGCRP04035 888 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 FAM163BP0C2L3 166 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 CCND2P30279 289 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ACADSBP45954 432 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ZNF667Q5HYK9 610 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 SPANXN2Q5MJ10 180 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 EPHX4Q8IUS5 362 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 SPICE1Q8N0Z3 855 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 POC5Q8NA72 575 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 SLC44A5Q8NCS7 719 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ACTL9Q8TC94 416 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 SYT15Q9BQS2 421 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 TMEM79Q9BSE2 394 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 GSDMCQ9BYG8 508 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ILKAPQ9H0C8 392 aaPredicted RBP6.52□□□□□ -1.37
VPS35-201ENST00000299138 RRN3Q9NYV6 651 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 OGDHLQ9ULD0 1010 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 B3GNT3Q9Y2A9 372 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 BCLAF3A2AJT9 711 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 TBX10O75333 385 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 TADA2AO75478 443 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 ABCB1P08183 1280 aaPredicted RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 RPS2P15880 293 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 POU1F1P28069 291 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 HARS2P49590 506 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 CLDN10P78369 228 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 CACNB1Q02641 598 aaPredicted RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 B3GNT9Q6UX72 402 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 RIPOR1Q6ZS17 1223 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 KRT78Q8N1N4 520 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 RMND5BQ96G75 393 aaPredicted RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 TUBA1CQ9BQE3 449 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 AGO2Q9UKV8 859 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 PRR12Q9ULL5 1215 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 FARP1Q9Y4F1 1045 aaPredicted RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 BCORQ6W2J9 1755 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 E2F8A0AVK6 867 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 KPNA3O00505 521 aaPredicted RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 PHGDHO43175 533 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 VPS4BO75351 444 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 CBX6O95503 412 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 C5orf22Q49AR2 442 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 KHDC1Q4VXA5 237 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 SAMD4BQ5PRF9 694 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 PLA2G4FQ68DD2 849 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 PRR5LQ6MZQ0 368 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 ESRP1Q6NXG1 681 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 CAMK1DQ8IU85 385 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 NDUFAF2Q8N183 169 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 ZNF384Q8TF68 577 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 SLC25A23Q9BV35 468 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 BHLHE41Q9C0J9 482 aaPredicted RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 GALNT8Q9NY28 637 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 IGSF9Q9P2J2 1179 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 MYPNQ86TC9 1320 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 CLRN2A0PK11 232 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 PLOD3O60568 738 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 ICAM1P05362 532 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 SERPIND1P05546 499 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 HOXC6P09630 235 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 VCLP18206 1134 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 SDC4P31431 198 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 MAGEA10P43363 369 aaPredicted RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 IST1P53990 364 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 GTF2H3Q13889 308 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 ZYXQ15942 572 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 MTX3Q5HYI7 312 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 GRTP1Q5TC63 336 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 GDPD5Q8WTR4 605 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 GOLPH3Q9H4A6 298 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 RGS17Q9UGC6 210 aaPredicted RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 SLC8A2Q9UPR5 921 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 CLCA2Q9UQC9 943 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 ASLP04424 464 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 RPN2P04844 631 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 CDH3P22223 829 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 JAK1P23458 1154 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms