RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 GARTP22102 1010 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 HOXA10P31260 410 aaPredicted RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 POLR2IP36954 125 aaKnown RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 PRKCQQ04759 706 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 DNASE1L3Q13609 305 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 MTERF2Q49AM1 385 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 PIGZQ86VD9 579 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 XYLT1Q86Y38 959 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 DCLK2Q8N568 766 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 PCDH19Q8TAB3 1148 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 CHPT1Q8WUD6 406 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 CANT1Q8WVQ1 401 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 ACDQ96AP0 544 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 ZNF668Q96K58 619 aaPredicted RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 VPS45Q9NRW7 570 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 SEPT9Q9UHD8 586 aaPredicted RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 TMA7Q9Y2S6 64 aaKnown RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 NOX1Q9Y5S8 564 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 CFAP99D6REC4 459 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 DLGAP1O14490 977 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 USP12O75317 370 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 ZNF12P17014 697 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 SERPINB9P50453 376 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 RGS21Q2M5E4 152 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 TRIM16LQ309B1 348 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 PGS1Q32NB8 556 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 ARL13AQ5H913 290 aaPredicted RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 THOC7Q6I9Y2 204 aaKnown RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 RPS27LQ71UM5 84 aaKnown RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 PIWIL3Q7Z3Z3 882 aaKnown RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 C4orf19Q8IY42 314 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 SGCDQ92629 289 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 RNF157Q96PX1 679 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 MPHOSPH6Q99547 160 aaKnown RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 FRMD8Q9BZ67 464 aaPredicted RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 TPK1Q9H3S4 243 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 NGRNQ9NPE2 291 aaKnown RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 DCDC2Q9UHG0 476 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 CNTN6Q9UQ52 1028 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 AURKCQ9UQB9 309 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 MRPL11Q9Y3B7 192 aaKnown RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 COPG1Q9Y678 874 aaKnown RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 ANKRD12Q6UB98 2062 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 SOBPA7XYQ1 873 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 TOR1BO14657 336 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 AQP9O43315 295 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 MT-ND1P03886 318 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 MX2P20592 715 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 IREB2P48200 963 aaKnown RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 NAGLUP54802 743 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 PSME3P61289 254 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 CLDN10P78369 228 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 KCNJ8Q15842 424 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 SWSAP1Q6NVH7 229 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 NIPAL1Q6NVV3 410 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 PRR23BQ6ZRT6 265 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 KCTD8Q6ZWB6 473 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 CADM3Q8N126 398 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 FLAD1Q8NFF5 587 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 BPIFB6Q8NFQ5 453 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 RP9Q8TA86 221 aaKnown RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 ANKRD60Q9BZ19 345 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 NDEL1Q9GZM8 345 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 DAPK2Q9UIK4 370 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 CCPG1Q9ULG6 757 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 A0A087WXM4 84 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 GRID2O43424 1007 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 KDM1AO60341 852 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 CAPNS1P04632 268 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 PABPC1P11940 636 aaKnown RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 TBXAS1P24557 533 aaPredicted RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 ATXN1P54253 815 aaKnown RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 MCCD1P59942 119 aaPredicted RBP13.72□□□□□ -0.21
SKA3-201ENST00000298260 MAMDC4Q6UXC1 1216 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 TIFABQ6ZNK6 161 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 SAMD3Q8N6K7 520 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 STARD8Q92502 1023 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 TFAP2CQ92754 450 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 TWNKQ96RR1 684 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 EFCAB1Q9HAE3 211 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 IL1RL2Q9HB29 575 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 POLE4Q9NR33 117 aa13.72□□□□□ -0.21
SKA3-201ENST00000298260 SIPA1L1O43166 1804 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 SLX4Q8IY92 1834 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 DPEP1P16444 411 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 TFEBP19484 476 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 MAP4P27816 1152 aaKnown RBP13.71□□□□□ -0.21
SKA3-201ENST00000298260 YBX1P67809 324 aaKnown RBP13.71□□□□□ -0.21
SKA3-201ENST00000298260 TFAMQ00059 246 aaKnown RBP13.71□□□□□ -0.21
SKA3-201ENST00000298260 BCL2A1Q16548 175 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 GLRA4Q5JXX5 417 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 DSG4Q86SJ6 1040 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 SAPCD2Q86UD0 394 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 CDAN1Q8IWY9 1227 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 KLHL25Q9H0H3 589 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 EHMT1Q9H9B1 1298 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 HESX1Q9UBX0 185 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 PCDHGA7Q9Y5G6 932 aa13.71□□□□□ -0.21
SKA3-201ENST00000298260 PTPRFP10586 1907 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms