RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 NIPA2Q8N8Q9 360 aa9.41□□□□□ -0.9
HMGN1-201ENST00000288344 C1orf216Q8TAB5 229 aa9.41□□□□□ -0.9
HMGN1-201ENST00000288344 FAM71BQ8TC56 605 aa9.41□□□□□ -0.9
HMGN1-201ENST00000288344 UCMAQ8WVF2 138 aa9.41□□□□□ -0.9
HMGN1-201ENST00000288344 RLN3Q8WXF3 142 aa9.41□□□□□ -0.9
HMGN1-201ENST00000288344 RNF34Q969K3 372 aa9.41□□□□□ -0.9
HMGN1-201ENST00000288344 ZNF419Q96HQ0 510 aaPredicted RBP9.41□□□□□ -0.9
HMGN1-201ENST00000288344 MRFAP1L1Q96HT8 127 aa9.41□□□□□ -0.9
HMGN1-201ENST00000288344 RPRD1AQ96P16 312 aaPredicted RBP9.41□□□□□ -0.9
HMGN1-201ENST00000288344 THAP2Q9H0W7 228 aa9.41□□□□□ -0.9
HMGN1-201ENST00000288344 RSPH9Q9H1X1 276 aaPredicted RBP9.41□□□□□ -0.9
HMGN1-201ENST00000288344 POLMQ9NP87 494 aaPredicted RBP9.41□□□□□ -0.9
HMGN1-201ENST00000288344 TMEM248Q9NWD8 314 aa9.41□□□□□ -0.9
HMGN1-201ENST00000288344 CNOT8Q9UFF9 292 aaKnown RBP9.41□□□□□ -0.9
HMGN1-201ENST00000288344 SMG5Q9UPR3 1016 aaKnown RBP9.41□□□□□ -0.9
HMGN1-201ENST00000288344 HS3ST2Q9Y278 367 aa9.41□□□□□ -0.9
HMGN1-201ENST00000288344 PAXBP1Q9Y5B6 917 aa9.41□□□□□ -0.9
HMGN1-201ENST00000288344 RALGAPA1Q6GYQ0 2036 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.4□□□□□ -0.9
HMGN1-201ENST00000288344 TARSL2A2RTX5 802 aaKnown RBP9.4□□□□□ -0.9
HMGN1-201ENST00000288344 ANKRD62A6NC57 917 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 TTC34A8MYJ7 566 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 H0Y626 953 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 RNF103O00237 685 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 ATP5BP06576 529 aaKnown RBP9.4□□□□□ -0.9
HMGN1-201ENST00000288344 RETP07949 1114 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 RHOQP17081 205 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 POLR2EP19388 210 aaKnown RBP9.4□□□□□ -0.9
HMGN1-201ENST00000288344 MIPP30301 263 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 PCK1P35558 622 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 STK19P49842 368 aaPredicted RBP9.4□□□□□ -0.9
HMGN1-201ENST00000288344 ARSEP51690 589 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 ZNF75DP51815 510 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 AIF1P55008 147 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 OXCT1P55809 520 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 RPS14P62263 151 aaKnown RBP9.4□□□□□ -0.9
HMGN1-201ENST00000288344 GFPT1Q06210 699 aaPredicted RBP9.4□□□□□ -0.9
HMGN1-201ENST00000288344 ZNF177Q13360 481 aaPredicted RBP9.4□□□□□ -0.9
HMGN1-201ENST00000288344 TRIM14Q14142 442 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 ACAP1Q15027 740 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 CDO1Q16878 200 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 RABGAP1LQ5R372 815 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 PEAR1Q5VY43 1037 aaPredicted RBP9.4□□□□□ -0.9
HMGN1-201ENST00000288344 AFMIDQ63HM1 303 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 PMS2CLQ68D20 193 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 TXNRD3NBQ6F5E7 133 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 LAIR1Q6GTX8 287 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 SND1Q7KZF4 910 aaKnown RBP eCLIP9.4□□□□□ -0.9
HMGN1-201ENST00000288344 TMC6Q7Z403 805 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 SLFN11Q7Z7L1 901 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 TMPRSS6Q8IU80 811 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 PSTKQ8IV42 348 aaKnown RBP9.4□□□□□ -0.9
HMGN1-201ENST00000288344 ZNF366Q8N895 744 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 OR2T3Q8NH03 318 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 RUBCNQ92622 972 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 ORAI3Q9BRQ5 295 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 PACSIN1Q9BY11 444 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 TPSD1Q9BZJ3 242 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 CIPCQ9C0C6 399 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 ZYG11BQ9C0D3 744 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 WSB2Q9NYS7 404 aaPredicted RBP9.4□□□□□ -0.9
HMGN1-201ENST00000288344 PLA2G4CQ9UP65 541 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 INVSQ9Y283 1065 aa9.4□□□□□ -0.9
HMGN1-201ENST00000288344 SMAD6O43541 496 aaKnown RBP9.39□□□□□ -0.91
HMGN1-201ENST00000288344 SNAP91O60641 907 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 LRP3O75074 770 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 MTA2O94776 668 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 ALDH1A2O94788 518 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 EPN2O95208 641 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 VAV1P15498 845 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 GLDCP23378 1020 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 HCAR3P49019 387 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 TPMTP51580 245 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 ARF5P84085 180 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 SLC25A11Q02978 314 aaKnown RBP9.39□□□□□ -0.91
HMGN1-201ENST00000288344 CDH18Q13634 790 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 E2F5Q15329 346 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 USP39Q53GS9 565 aaKnown RBP9.39□□□□□ -0.91
HMGN1-201ENST00000288344 CCDC122Q5T0U0 273 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 DAB2IPQ5VWQ8 1189 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 RNF219Q5W0B1 726 aaPredicted RBP9.39□□□□□ -0.91
HMGN1-201ENST00000288344 SDE2Q6IQ49 451 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 CPNE8Q86YQ8 564 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 SLC41A1Q8IVJ1 513 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 UMODL1-AS1Q8N2C9 162 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 SH2D3CQ8N5H7 860 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 HMGB4Q8WW32 186 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 RPL10LQ96L21 214 aaKnown RBP9.39□□□□□ -0.91
HMGN1-201ENST00000288344 LRRC19Q9H756 370 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 NHEJ1Q9H9Q4 299 aaPredicted RBP9.39□□□□□ -0.91
HMGN1-201ENST00000288344 TMEM74BQ9NUR3 256 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 SEPT11Q9NVA2 429 aaKnown RBP9.39□□□□□ -0.91
HMGN1-201ENST00000288344 SUN2Q9UH99 717 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 VPS51Q9UID3 782 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 GPSM3Q9Y4H4 160 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 DOCK9Q9BZ29 2069 aa9.39□□□□□ -0.91
HMGN1-201ENST00000288344 BCLAF3A2AJT9 711 aaKnown RBP9.38□□□□□ -0.91
HMGN1-201ENST00000288344 K7ERQ8 282 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 TM4SF5O14894 197 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 SRGAP2O75044 1071 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms