RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 CTBP1Q13363 440 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 TMED1Q13445 227 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 DGKDQ16760 1214 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 C16orf89Q6UX73 402 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 GK5Q6ZS86 529 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 PLPPR4Q7Z2D5 763 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 PIGZQ86VD9 579 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 PKP2Q99959 881 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 RTKNQ9BST9 563 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 PCDHAC1Q9H158 963 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 ATXN3LQ9H3M9 355 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 STN1Q9H668 368 aaKnown RBP12.63□□□□□ -0.39
CHMP3-201ENST00000263856 KIAA1257Q9ULG3 409 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 SIP14410 1827 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 LCTP09848 1927 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 NFKBIEO00221 500 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 IRF6O14896 467 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 HNRNPLP14866 589 aaKnown RBP eCLIP12.63□□□□□ -0.39
CHMP3-201ENST00000263856 HDCP19113 662 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 NMBRP28336 390 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 HARS2P49590 506 aaKnown RBP12.63□□□□□ -0.39
CHMP3-201ENST00000263856 BCAT1P54687 386 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 RALGDSQ12967 914 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 ITGA7Q13683 1181 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 HNRNPDQ14103 355 aaKnown RBP12.63□□□□□ -0.39
CHMP3-201ENST00000263856 POU6F1Q14863 301 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 HFE2Q6ZVN8 426 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 EXOC8Q8IYI6 725 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 SIX6OS1Q8N1H7 587 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 RNF34Q969K3 372 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 NXF3Q9H4D5 531 aaKnown RBP12.63□□□□□ -0.39
CHMP3-201ENST00000263856 CDYLQ9Y232 598 aa12.63□□□□□ -0.39
CHMP3-201ENST00000263856 RLFQ13129 1914 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 G3V2L1 256 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 DNAJA2O60884 412 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 ALDH1A2O94788 518 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 LGALS2P05162 132 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 ATP5BP06576 529 aaKnown RBP12.62□□□□□ -0.39
CHMP3-201ENST00000263856 PABPC4LP0CB38 370 aaKnown RBP12.62□□□□□ -0.39
CHMP3-201ENST00000263856 TSPAN8P19075 237 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 NFKB1P19838 968 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 LIMK2P53671 638 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 NME5P56597 212 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 TPI1P60174 286 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 PRAMEP78395 509 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 TTLL4Q14679 1199 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 STEAP4Q687X5 459 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 ATP6V1E2Q96A05 226 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 OSMRQ99650 979 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 CAAP1Q9H8G2 361 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 LIN28AQ9H9Z2 209 aaKnown RBP12.62□□□□□ -0.39
CHMP3-201ENST00000263856 RGSL1A5PLK6 1076 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 NEMP2A6NFY4 417 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 JCHAINP01591 159 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 ERCC2P18074 760 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 RPL14P50914 215 aaKnown RBP12.62□□□□□ -0.39
CHMP3-201ENST00000263856 CDK18Q07002 472 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 LSAMPQ13449 338 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 CEACAM7Q14002 265 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 SEPT6Q14141 434 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 SPANXN3Q5MJ09 141 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 ZNF280DQ6N043 979 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 KLHDC10Q6PID8 442 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 SLC26A9Q7LBE3 791 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 ADGRG6Q86SQ4 1221 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 TRIML2Q8N7C3 387 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 EDEM1Q92611 657 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 PREBQ9HCU5 417 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 XPR1Q9UBH6 696 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 FZD10Q9ULW2 581 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 CROCCQ5TZA2 2017 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 PSME4Q14997 1843 aa12.62□□□□□ -0.39
CHMP3-201ENST00000263856 PARP14Q460N5 1801 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 HDAC3O15379 428 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 BEST1O76090 585 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 TFEBP19484 476 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 EDNRBP24530 442 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 TKTP29401 623 aaKnown RBP12.61□□□□□ -0.39
CHMP3-201ENST00000263856 MAP3K7CLP57077 242 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 CDKL1Q00532 357 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 PTK2BQ14289 1009 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 SH2D4BQ5SQS7 431 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 LILRA2Q8N149 483 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 METTL25Q8N6Q8 603 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 BEST2Q8NFU1 509 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 DIS3LQ8TF46 1054 aaKnown RBP12.61□□□□□ -0.39
CHMP3-201ENST00000263856 EXT2Q93063 718 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 IL1RL2Q9HB29 575 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 CCDC167Q9P0B6 97 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 STK39Q9UEW8 545 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 HEMK1Q9Y5R4 338 aaPredicted RBP12.61□□□□□ -0.39
CHMP3-201ENST00000263856 SNX13Q9Y5W8 968 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 DOCK1Q14185 1865 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 KCNU1A8MYU2 1149 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 MYL4P12829 197 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 DPP6P42658 865 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 PTPN9P43378 593 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 MPP1Q00013 466 aa12.61□□□□□ -0.39
CHMP3-201ENST00000263856 PDAP1Q13442 181 aaKnown RBP12.61□□□□□ -0.39
CHMP3-201ENST00000263856 RWDD4Q6NW29 188 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms