RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ERAP2Q6P179 960 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 NECAB2Q7Z6G3 386 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 CAMK1DQ8IU85 385 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 SVOPQ8N4V2 548 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 PCDH20Q8N6Y1 951 aaKnown RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 ZSCAN18Q8TBC5 510 aaPredicted RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 STAG3L4Q8TBR4 150 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 BTN2A2Q8WVV5 523 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 MTERF3Q96E29 417 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 KREMEN1Q96MU8 473 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 PAIP1Q9H074 479 aaKnown RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 UBA2Q9UBT2 640 aaPredicted RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 DUX4Q9UBX2 424 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 CRYL1Q9Y2S2 319 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 COPG1Q9Y678 874 aaKnown RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 TCRBV9S1A1TA0A576 114 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 CYP2A7P20853 494 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 MMP8P22894 467 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 C9orf131Q5VYM1 1079 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 TRAF7Q6Q0C0 670 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 OOSP2Q86WS3 158 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 ZCCHC7Q8N3Z6 543 aaKnown RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 SPPL2AQ8TCT8 520 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 MCOLN3Q8TDD5 553 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 ACE2Q9BYF1 805 aaPredicted RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 MIEF1Q9NQG6 463 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 SH3BP4Q9P0V3 963 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 MORF4L1Q9UBU8 362 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 DOLKQ9UPQ8 538 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 SATB2Q9UPW6 733 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 AP3M1Q9Y2T2 418 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 FMN2Q9NZ56 1722 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 RGSL1A5PLK6 1076 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 DCDC2CA8MYV0 355 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 SPTLC1O15269 473 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 ATG7O95352 703 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 AKR1A1P14550 325 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 GRK3P35626 688 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 TNFSF9P41273 254 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 ADCYAP1R1P41586 468 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 ARL4DP49703 201 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 IL2P60568 153 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 ALDH6A1Q02252 535 aaKnown RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 ACVR2BQ13705 512 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 TATDN1Q6P1N9 297 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 DNAJC14Q6Y2X3 702 aaPredicted RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 KRT78Q8N1N4 520 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 STK40Q8N2I9 435 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 RORBQ92753 470 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 PANX3Q96QZ0 392 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 HGH1Q9BTY7 390 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 TPRKBQ9Y3C4 175 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 TNPO3Q9Y5L0 923 aaKnown RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 SPACA6W5XKT8 324 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 SPATA31C2B4DYI2 1134 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 PEX1O43933 1283 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ZNF862O60290 1169 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 NOL4O94818 638 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ITGA2BP08514 1039 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ITGB6P18564 788 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 PAX7P23759 505 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 TTKP33981 857 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 FLT3P36888 993 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 PCBP1Q15365 356 aaKnown RBP eCLIP10.91□□□□□ -0.66
CD44-201ENST00000263398 FAM171A1Q5VUB5 890 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 WSCD1Q658N2 575 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ARMC6Q6NXE6 501 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 PLPPR4Q7Z2D5 763 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 GPSM1Q86YR5 675 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 LRRC49Q8IUZ0 686 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 LGI2Q8N0V4 545 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 BHLHE22Q8NFJ8 381 aaPredicted RBP10.91□□□□□ -0.66
CD44-201ENST00000263398 ITFG1Q8TB96 612 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ACTRT2Q8TDY3 377 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 TMEM159Q96B96 161 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 PGLYRP2Q96PD5 576 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 PCDHB18PQ96TA0 734 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 APOL4Q9BPW4 351 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 DCUN1D5Q9BTE7 237 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 GLIS2Q9BZE0 524 aaPredicted RBP10.91□□□□□ -0.66
CD44-201ENST00000263398 PTPRHQ9HD43 1115 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 DDX18Q9NVP1 670 aaKnown RBP10.91□□□□□ -0.66
CD44-201ENST00000263398 AHSPQ9NZD4 102 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 SERPINA6P08185 405 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 CCDC166P0CW27 439 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 PCNAP12004 261 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 COX4I1P13073 169 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 NFKB1P19838 968 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 CLCN5P51795 746 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 C16orf72Q14CZ0 275 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 NEDD8Q15843 81 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ARMCX4Q5H9R4 360 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 UTP15Q8TED0 518 aaKnown RBP10.91□□□□□ -0.66
CD44-201ENST00000263398 PURBQ96QR8 312 aaKnown RBP10.91□□□□□ -0.66
CD44-201ENST00000263398 TMEM106CQ9BVX2 250 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 CIPCQ9C0C6 399 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 KLHL25Q9H0H3 589 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ERVK-5Q9HDB9 667 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ENOPH1Q9UHY7 261 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 RAP2CQ9Y3L5 183 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms