RNA–Protein interactions for RNA: ENST00000046640.7

CTNS-201, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNS, Length 2,866 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-201ENST00000046640 C17orf99Q6UX52 265 aa13.41□□□□□ -0.26
CTNS-201ENST00000046640 C10orf107Q8IVU9 208 aa13.41□□□□□ -0.26
CTNS-201ENST00000046640 APBA2Q99767 749 aa13.41□□□□□ -0.26
CTNS-201ENST00000046640 UNKQ9C0B0 810 aaKnown RBP13.41□□□□□ -0.26
CTNS-201ENST00000046640 EBF3Q9H4W6 596 aa13.41□□□□□ -0.26
CTNS-201ENST00000046640 SLC38A7Q9NVC3 462 aa13.41□□□□□ -0.26
CTNS-201ENST00000046640 SIRPGQ9P1W8 387 aa13.41□□□□□ -0.26
CTNS-201ENST00000046640 VANGL2Q9ULK5 521 aa13.41□□□□□ -0.26
CTNS-201ENST00000046640 GABRQQ9UN88 632 aa13.41□□□□□ -0.26
CTNS-201ENST00000046640 LAMA2P24043 3122 aaKnown RBP13.4□□□□□ -0.26
CTNS-201ENST00000046640 AHCYL1O43865 530 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 TM7SF2O76062 418 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 SERPINB9P50453 376 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 AP2B1P63010 937 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 DSG1Q02413 1049 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 CRHR2Q13324 411 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 UPP1Q16831 310 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 TEX44Q53QW1 395 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 STRA8Q7Z7C7 330 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 PLD6Q8N2A8 252 aaKnown RBP13.4□□□□□ -0.26
CTNS-201ENST00000046640 CERS2Q96G23 380 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 CCDC106Q9BWC9 280 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 CNGB3Q9NQW8 809 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 MAN1C1Q9NR34 630 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 RCOR3Q9P2K3 495 aaPredicted RBP13.4□□□□□ -0.26
CTNS-201ENST00000046640 ASB3Q9Y575 518 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 RALGAPA2Q2PPJ7 1873 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 SHROOM3Q8TF72 1996 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 UNCXA6NJT0 531 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 HHLA1C9JL84 531 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 GSRP00390 522 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 PROCP04070 461 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 LYNP07948 512 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 BNIPLQ7Z465 357 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 RASAL3Q86YV0 1011 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 PSTKQ8IV42 348 aaKnown RBP13.4□□□□□ -0.26
CTNS-201ENST00000046640 OR10T2Q8NGX3 314 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 SMARCD1Q96GM5 515 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 MLPHQ9BV36 600 aaPredicted RBP13.4□□□□□ -0.26
CTNS-201ENST00000046640 ATXN3LQ9H3M9 355 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 CPSF2Q9P2I0 782 aaKnown RBP13.4□□□□□ -0.26
CTNS-201ENST00000046640 PLA2G4CQ9UP65 541 aa13.4□□□□□ -0.26
CTNS-201ENST00000046640 ALDH1A2O94788 518 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 MT-CYBP00156 380 aaPredicted RBP13.39□□□□□ -0.27
CTNS-201ENST00000046640 GSTA2P09210 222 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 SERPINB6P35237 376 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 ATXN3P54252 364 aaPredicted RBP13.39□□□□□ -0.27
CTNS-201ENST00000046640 IRF9Q00978 393 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 ARL13BQ3SXY8 428 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 BHLHA9Q7RTU4 235 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 DCLK2Q8N568 766 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 GATA6Q92908 595 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 C7orf26Q96N11 449 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 ADAM2Q99965 735 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 ECSITQ9BQ95 431 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 MTG1Q9BT17 334 aaPredicted RBP13.39□□□□□ -0.27
CTNS-201ENST00000046640 BFARQ9NZS9 450 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 MLNP12872 115 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 RAP1GDS1P52306 607 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 ASPHQ12797 758 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 STEAP4Q687X5 459 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 CWF19L1Q69YN2 538 aaKnown RBP13.39□□□□□ -0.27
CTNS-201ENST00000046640 MARK2Q7KZI7 788 aaKnown RBP13.39□□□□□ -0.27
CTNS-201ENST00000046640 NET1Q7Z628 596 aaPredicted RBP13.39□□□□□ -0.27
CTNS-201ENST00000046640 PNPLA1Q8N8W4 532 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 TRIB2Q92519 343 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 OXCT2Q9BYC2 517 aaPredicted RBP13.39□□□□□ -0.27
CTNS-201ENST00000046640 SENP6Q9GZR1 1112 aaPredicted RBP13.39□□□□□ -0.27
CTNS-201ENST00000046640 MMADHCQ9H3L0 296 aaPredicted RBP13.39□□□□□ -0.27
CTNS-201ENST00000046640 IARS2Q9NSE4 1012 aaKnown RBP13.39□□□□□ -0.27
CTNS-201ENST00000046640 C20orf96Q9NUD7 363 aaPredicted RBP13.39□□□□□ -0.27
CTNS-201ENST00000046640 CDH9Q9ULB4 789 aa13.39□□□□□ -0.27
CTNS-201ENST00000046640 MAGEC1O60732 1142 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 RNASEH1O60930 286 aaKnown RBP13.38□□□□□ -0.27
CTNS-201ENST00000046640 TOMM70O94826 608 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 FBXO21O94952 628 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 ARRB2P32121 409 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 MSX2P35548 267 aaPredicted RBP13.38□□□□□ -0.27
CTNS-201ENST00000046640 SLC1A6P48664 564 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 RAB27AP51159 221 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 ACTR3P61158 418 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 CDC16Q13042 620 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 ITGA9Q13797 1035 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 IFNL1Q8IU54 200 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 SCN4BQ8IWT1 228 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 TRIM42Q8IWZ5 723 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 DQX1Q8TE96 717 aaKnown RBP13.38□□□□□ -0.27
CTNS-201ENST00000046640 ATP2A3Q93084 1043 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 SNX15Q9NRS6 342 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 TRMT13Q9NUP7 481 aaKnown RBP13.38□□□□□ -0.27
CTNS-201ENST00000046640 NDFIP2Q9NV92 336 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 LAMA3Q16787 3333 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 A0A088AWK7 358 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 PLIN3O60664 434 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 DUSP11O75319 330 aaKnown RBP13.38□□□□□ -0.27
CTNS-201ENST00000046640 CD1EP15812 388 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 NMBRP28336 390 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 AVPR1AP37288 418 aa13.38□□□□□ -0.27
CTNS-201ENST00000046640 GARSP41250 739 aaKnown RBP13.38□□□□□ -0.27
CTNS-201ENST00000046640 SEMA3BQ13214 749 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms