RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ANKRD52Q8NB46 1076 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 NDNQ99608 321 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 CYP4F12Q9HCS2 524 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 CRTAC1Q9NQ79 661 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 SFMBT1Q9UHJ3 866 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 KPNA7A9QM74 516 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 IFRD2Q12894 506 aaPredicted RBP10.9□□□□□ -0.66
USP28-201ENST00000003302 DPYSQ14117 519 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 TMCO4Q5TGY1 634 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 EPGNQ6UW88 154 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 TIFABQ6ZNK6 161 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 CDKL3Q8IVW4 592 aaPredicted RBP10.9□□□□□ -0.66
USP28-201ENST00000003302 PCDH20Q8N6Y1 951 aaKnown RBP10.9□□□□□ -0.66
USP28-201ENST00000003302 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.9□□□□□ -0.66
USP28-201ENST00000003302 KLHL8Q9P2G9 620 aaPredicted RBP10.9□□□□□ -0.66
USP28-201ENST00000003302 TREHO43280 583 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 CCNT2O60583 730 aaKnown RBP10.9□□□□□ -0.66
USP28-201ENST00000003302 LMNAP02545 664 aaKnown RBP10.9□□□□□ -0.66
USP28-201ENST00000003302 AHSGP02765 367 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 NCAM1P13591 858 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 TSHRP16473 764 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 ATICP31939 592 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 ABCD1P33897 745 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 MATKP42679 507 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 AP2B1P63010 937 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 NRF1Q16656 503 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 ANKRD20A4Q4UJ75 823 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 TMEM209Q96SK2 561 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 RBBP8Q99708 897 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 SPATA16Q9BXB7 569 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 C1QTNF1Q9BXJ1 281 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 ULBP1Q9BZM6 244 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 PLOD2O00469 737 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 PTGESO14684 152 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 PIGNO95427 931 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 SLC35E2BP0CK96 405 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 ENO3P13929 434 aaPredicted RBP10.9□□□□□ -0.66
USP28-201ENST00000003302 UGT1A6P19224 532 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 PTPN9P43378 593 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 KCNC1P48547 511 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 HARS2P49590 506 aaKnown RBP10.9□□□□□ -0.66
USP28-201ENST00000003302 MTTPP55157 894 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 SATB1Q01826 763 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 R3HDM1Q15032 1099 aaKnown RBP10.9□□□□□ -0.66
USP28-201ENST00000003302 FAM187BQ17R55 369 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 FBXO47Q5MNV8 452 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 UGT2A3Q6UWM9 527 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 CATSPER4Q7RTX7 472 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 TDRD5Q8NAT2 981 aaKnown RBP10.9□□□□□ -0.66
USP28-201ENST00000003302 NAT14Q8WUY8 206 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 NUDT8Q8WV74 236 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 EMID1Q96A84 441 aaPredicted RBP10.9□□□□□ -0.66
USP28-201ENST00000003302 PKP2Q99959 881 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 FBRSL1Q9HCM7 1045 aaKnown RBP10.9□□□□□ -0.66
USP28-201ENST00000003302 KCNG1Q9UIX4 513 aa10.9□□□□□ -0.66
USP28-201ENST00000003302 A0A1B0GTL3 188 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 MAGEA13PA6NCF6 341 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 BIRC5O15392 142 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 OPHN1O60890 802 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 JCHAINP01591 159 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 TFAP2AP05549 437 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 P4HA1P13674 534 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 LILRA4P59901 499 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 FOLH1Q04609 750 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 PTPRCAPQ14761 206 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 LIN52Q52LA3 116 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 ESRP1Q6NXG1 681 aaKnown RBP10.9□□□□□ -0.67
USP28-201ENST00000003302 ALKAL1Q6UXT8 129 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 GK5Q6ZS86 529 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 BHLHA9Q7RTU4 235 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 CLEC14AQ86T13 490 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 PPFIBP2Q8ND30 876 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 ACTRT2Q8TDY3 377 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 MIOSQ9NXC5 875 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 VANGL2Q9ULK5 521 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 PIN4Q9Y237 131 aaKnown RBP10.9□□□□□ -0.67
USP28-201ENST00000003302 TBC1D30Q9Y2I9 924 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 CSADQ9Y600 493 aa10.9□□□□□ -0.67
USP28-201ENST00000003302 CFAP54Q96N23 3096 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 AHCYL1O43865 530 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 GRIA4P48058 902 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 IRX1P78414 480 aaPredicted RBP10.89□□□□□ -0.67
USP28-201ENST00000003302 BST2Q10589 180 aaKnown RBP10.89□□□□□ -0.67
USP28-201ENST00000003302 TTLL4Q14679 1199 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 RBM20Q5T481 1227 aaKnown RBP10.89□□□□□ -0.67
USP28-201ENST00000003302 RASIP1Q5U651 963 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 ZNF772Q68DY9 489 aaPredicted RBP10.89□□□□□ -0.67
USP28-201ENST00000003302 KYAT3Q6YP21 454 aaKnown RBP10.89□□□□□ -0.67
USP28-201ENST00000003302 ARCQ7LC44 396 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 RNF135Q8IUD6 432 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 FSTL5Q8N475 847 aaPredicted RBP10.89□□□□□ -0.67
USP28-201ENST00000003302 B3GALNT2Q8NCR0 500 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 SCAMP5Q8TAC9 235 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 URGCPQ8TCY9 931 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 PPP4R1Q8TF05 950 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 TMIGD2Q96BF3 282 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 NXNL1Q96CM4 212 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 VPS39Q96JC1 886 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 NPY6RQ99463 290 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 MCMBPQ9BTE3 642 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 289.6 ms