RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	PATE3	B3GLJ2	98 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	SLC30A4	O14863	429 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	RNASEH1	O60930	286 aa	Known RBP	15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	GZMA	P12544	262 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	VASP	P50552	380 aa	Predicted RBP	15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	ZNF143	P52747	638 aa	Predicted RBP	15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	RPL7A	P62424	266 aa	Known RBP	15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	NRG1	Q02297	640 aa	Predicted RBP	15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	TTC31	Q49AM3	519 aa	Predicted RBP	15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	SYCP2L	Q5T4T6	812 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	ARTN	Q5T4W7	220 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	C6orf118	Q5T5N4	469 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	DCUN1D2	Q6PH85	259 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	TFAP2D	Q7Z6R9	452 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	CADM4	Q8NFZ8	388 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	IQCD	Q96DY2	449 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	RTKN	Q9BST9	563 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	GPR174	Q9BXC1	333 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	OSBPL2	Q9H1P3	480 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	PPARGC1A	Q9UBK2	798 aa	Known RBP	15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	OR12D3	Q9UGF7	316 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	SLC25A13	Q9UJS0	675 aa		15.44	■□□□□ 0.06
PHGDH-231	ENST00000641939	LNP1	A1A4G5	178 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	DDX3X	O00571	662 aa	Known RBP eCLIP	15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	CCP110	O43303	1012 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	TPM3	P06753	285 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	SKIL	P12757	684 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	OR1E1	P30953	314 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	KRT83	P78385	493 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	ZBED6	P86452	979 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	TRIM61	Q5EBN2	209 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	WDR45B	Q5MNZ6	344 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	MANEAL	Q5VSG8	457 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	LRSAM1	Q6UWE0	723 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	ERMP1	Q7Z2K6	904 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	DGLUCY	Q7Z3D6	616 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	RABEPK	Q7Z6M1	372 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	FAM124A	Q86V42	546 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	RGL4	Q8IZJ4	473 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	CCDC185	Q8N715	623 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	CEP76	Q8TAP6	659 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	FRS2	Q8WU20	508 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	SYN2	Q92777	582 aa	Predicted RBP	15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	PTPRN2	Q92932	1015 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	NTAN1	Q96AB6	310 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	CNPY3	Q9BT09	278 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	EDEM2	Q9BV94	578 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	C2orf49	Q9BVC5	232 aa	Predicted RBP	15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	TSPY26P	Q9H489	355 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	PARVA	Q9NVD7	372 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	ZNF212	Q9UDV6	495 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	SCML1	Q9UN30	329 aa		15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	BZW2	Q9Y6E2	419 aa	Known RBP	15.43	■□□□□ 0.06
PHGDH-231	ENST00000641939	ILVBL	A1L0T0	632 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	MEI4	A8MW99	385 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	ATP9B	O43861	1147 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	RTN2	O75298	545 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	FTL	P02792	175 aa	Predicted RBP	15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	PLEK	P08567	350 aa	Predicted RBP	15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	DES	P17661	470 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	IRX4	P78413	519 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	SCAP	Q12770	1279 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	SFSWAP	Q12872	951 aa	Known RBP	15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	MAMLD1	Q13495	774 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	DUOXA1	Q1HG43	343 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	ACCSL	Q4AC99	568 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	TDRD12	Q587J7	1177 aa	Known RBP	15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	STPG1	Q5TH74	334 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	PLEKHA7	Q6IQ23	1121 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	SLC23A3	Q6PIS1	610 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	ZNF783	Q6ZMS7	281 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	SLFN11	Q7Z7L1	901 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	MMAA	Q8IVH4	418 aa	Known RBP	15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	STK40	Q8N2I9	435 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	CPLX3	Q8WVH0	158 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	FAM129B	Q96TA1	746 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	PSMB7	Q99436	277 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	NUSAP1	Q9BXS6	441 aa	Known RBP	15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	BTBD1	Q9H0C5	482 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	PCED1A	Q9H1Q7	454 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	PABPC3	Q9H361	631 aa	Known RBP	15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	RETREG1	Q9H6L5	497 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	VPS51	Q9UID3	782 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	CAPN11	Q9UMQ6	739 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	NCKAP1	Q9Y2A7	1128 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939	NCOR2	Q9Y618	2525 aa		15.42	■□□□□ 0.06
PHGDH-231	ENST00000641939		A0A0D9SEW6	157 aa		15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	FAM72C	H0Y354	149 aa		15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	ATMIN	O43313	823 aa	Predicted RBP	15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	SNAP91	O60641	907 aa		15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	CFI	P05156	583 aa		15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	VAV1	P15498	845 aa		15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	ACSL1	P33121	698 aa		15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	ELAVL3	Q14576	367 aa	Known RBP	15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	DLG2	Q15700	870 aa		15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	CST6	Q15828	149 aa		15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	FAM72A	Q5TYM5	149 aa		15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	DCAF12L1	Q5VU92	463 aa		15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	HGSNAT	Q68CP4	663 aa		15.41	■□□□□ 0.06
PHGDH-231	ENST00000641939	IL31	Q6EBC2	164 aa		15.41	■□□□□ 0.06

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms