RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	C9orf72	Q96LT7	481 aa		10.71	□□□□□ -0.69
NECAP1-223	ENST00000640091	BRD8	Q9H0E9	1235 aa		10.71	□□□□□ -0.69
NECAP1-223	ENST00000640091	ZDHHC7	Q9NXF8	308 aa		10.71	□□□□□ -0.69
NECAP1-223	ENST00000640091	DPP7	Q9UHL4	492 aa		10.71	□□□□□ -0.69
NECAP1-223	ENST00000640091	IPO11	Q9UI26	975 aa	Known RBP	10.71	□□□□□ -0.69
NECAP1-223	ENST00000640091	SH3BP1	Q9Y3L3	701 aa		10.71	□□□□□ -0.69
NECAP1-223	ENST00000640091	TTLL3	Q9Y4R7	772 aa		10.71	□□□□□ -0.69
NECAP1-223	ENST00000640091	MTCL1	Q9Y4B5	1905 aa	Known RBP	10.71	□□□□□ -0.7
NECAP1-223	ENST00000640091	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091		E7EVH7	732 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	AGPS	O00116	658 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	RAMP2	O60895	175 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	PSMB4	P28070	264 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	CD68	P34810	354 aa	Predicted RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	BMP8B	P34820	402 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	GRIA1	P42261	906 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	NDST2	P52849	883 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	SLC29A2	Q14542	456 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	KCNJ11	Q14654	390 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	SLMAP	Q14BN4	828 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	FASTKD3	Q14CZ7	662 aa	Known RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	C5orf22	Q49AR2	442 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	PRSS36	Q5K4E3	855 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	RABGAP1L	Q5R372	815 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	CFAP58	Q5T655	872 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	CHRDL2	Q6WN34	429 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091		Q6ZNB5	142 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	TPGS1	Q6ZTW0	290 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	IQCK	Q8N0W5	287 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	CNTD1	Q8N815	330 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	PDCD7	Q8N8D1	485 aa	Known RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	ST13P5	Q8NFI4	369 aa	Predicted RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	RIN3	Q8TB24	985 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	SH3RF2	Q8TEC5	729 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	TMA16	Q96EY4	203 aa	Known RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	ZIM3	Q96PE6	472 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	TSGA13	Q96PP4	275 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	FAM129A	Q9BZQ8	928 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	EPB41L4B	Q9H329	900 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	CDC42EP4	Q9H3Q1	356 aa	Known RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	TASP1	Q9H6P5	420 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	SAYSD1	Q9NPB0	183 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	PIH1D1	Q9NWS0	290 aa	Known RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	PLK2	Q9NYY3	685 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	STOML2	Q9UJZ1	356 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	SHOC2	Q9UQ13	582 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	MRPS23	Q9Y3D9	190 aa	Known RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	GOLGA6B	A6NDN3	693 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	MATN3	O15232	486 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	LINC01565	O15544	149 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	OPHN1	O60890	802 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	TBL1X	O60907	577 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	ACSL3	O95573	720 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	CDH4	P55283	916 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	PDIA2	Q13087	525 aa	Known RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	OLIG2	Q13516	323 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	KCNC3	Q14003	757 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	SPARCL1	Q14515	664 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	ARHGAP15	Q53QZ3	475 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	HTR3D	Q70Z44	454 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	OTOP3	Q7RTS5	596 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	ANKMY2	Q8IV38	441 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	ZBED8	Q8IZ13	594 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	USP13	Q92995	863 aa	Predicted RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	PABPC5	Q96DU9	382 aa	Known RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	MRPL38	Q96DV4	380 aa	Known RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	LMAN2L	Q9H0V9	348 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	PABPC3	Q9H361	631 aa	Known RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	VIPAS39	Q9H9C1	493 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	LRRC4C	Q9HCJ2	640 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	TDP1	Q9NUW8	608 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	UBP1	Q9NZI7	540 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	LSM7	Q9UK45	103 aa	Known RBP	10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	PLAA	Q9Y263	795 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	ACTL7A	Q9Y615	435 aa		10.7	□□□□□ -0.7
NECAP1-223	ENST00000640091	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	ARHGAP42	A6NI28	874 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	CHAD	O15335	359 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	PRAMEF12	O95522	483 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	FGF19	O95750	216 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	CEBPB	P17676	345 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	MAGEA4	P43358	317 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	LMAN1	P49257	510 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	ZNF177	Q13360	481 aa	Predicted RBP	10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	HIF1A	Q16665	826 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	PARP6	Q2NL67	630 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	FSCB	Q5H9T9	825 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	CAPN12	Q6ZSI9	719 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	HOOK3	Q86VS8	718 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	ARID3B	Q8IVW6	561 aa	Predicted RBP	10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	CARNMT1	Q8N4J0	409 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	OR7D4	Q8NG98	312 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	TEKT5	Q96M29	485 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	SPON2	Q9BUD6	331 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	RBM22	Q9NW64	420 aa	Known RBP eCLIP	10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	DONSON	Q9NYP3	566 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	ARHGAP26	Q9UNA1	814 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	CLUH	O75153	1309 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091		H0Y626	953 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	MTSS1	O43312	755 aa		10.69	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms