RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 BEND5Q7L4P6 421 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 DSG4Q86SJ6 1040 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 IQCHQ86VS3 1027 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 ATP6V0D2Q8N8Y2 350 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 SNIP1Q8TAD8 396 aaKnown RBP19.99■□□□□ 0.79
CLN3-262ENST00000637699 LMO3Q8TAP4 145 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 OR8D1Q8WZ84 308 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 FGF11Q92914 225 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 KDM4CQ9H3R0 1056 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 DMTF1Q9Y222 760 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 CA5BQ9Y2D0 317 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 DOCK9Q9BZ29 2069 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 KCNU1A8MYU2 1149 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 PMM2O15305 246 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 PLRG1O43660 514 aaKnown RBP19.98■□□□□ 0.79
CLN3-262ENST00000637699 SIGLEC6O43699 453 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 CCDC173Q0VFZ6 552 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 CETN1Q12798 172 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 CNTN1Q12860 1018 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 PROX2Q3B8N5 592 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 FAM46CQ5VWP2 391 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 KDM7AQ6ZMT4 941 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 FMR1NBQ8N0W7 255 aaPredicted RBP19.98■□□□□ 0.79
CLN3-262ENST00000637699 SMARCE1Q969G3 411 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 FAM131CQ96AQ9 280 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 TRIM62Q9BVG3 475 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 POPDC2Q9HBU9 364 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.98■□□□□ 0.79
CLN3-262ENST00000637699 SLC12A6Q9UHW9 1150 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 ATP6V1DQ9Y5K8 247 aa19.98■□□□□ 0.79
CLN3-262ENST00000637699 MGAQ8IWI9 3026 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 E5RJQ4 531 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 TRIM38O00635 465 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 SLC7A4O43246 635 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 SMC2O95347 1197 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 KRT5P13647 590 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 ZNF18P17022 549 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 ACP1P24666 158 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 ACTN2P35609 894 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 NUDT1P36639 197 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 PLK1P53350 603 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 YWHAZP63104 245 aaKnown RBP19.97■□□□□ 0.79
CLN3-262ENST00000637699 GCNT1Q02742 428 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 OVGP1Q12889 678 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 AGBL4Q5VU57 503 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 ISM2Q6H9L7 571 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 SLC25A45Q8N413 288 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 DCBLD1Q8N8Z6 715 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 RFFLQ8WZ73 363 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 KLHDC7BQ96G42 594 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 KREMEN1Q96MU8 473 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 PRMT1Q99873 361 aaKnown RBP19.97■□□□□ 0.79
CLN3-262ENST00000637699 SLC4A5Q9BY07 1137 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 SLC25A13Q9UJS0 675 aa19.97■□□□□ 0.79
CLN3-262ENST00000637699 SYNJ2BP-COX16A0A087WUM0 186 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 A0A1B0GVM2 712 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 TCAF2A6NFQ2 919 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 PRAMEF26H0Y7S4 382 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 PSMA7O14818 248 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 BNIP3LO60238 219 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 IGLV3-25P01717 112 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 DAB2P98082 770 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 TAF5Q15542 800 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 DLG2Q15700 870 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 SETMARQ53H47 684 aaPredicted RBP19.96■□□□□ 0.79
CLN3-262ENST00000637699 RABGAP1LQ5R372 815 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 CXorf57Q6NSI4 855 aaKnown RBP19.96■□□□□ 0.79
CLN3-262ENST00000637699 Q6ZVU0 165 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 GPR155Q7Z3F1 870 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 TRIM69Q86WT6 500 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 CACTIN-AS1Q8N1I8 211 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 EHBP1Q8NDI1 1231 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 STK32AQ8WU08 396 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 KLK6Q92876 244 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 RNF34Q969K3 372 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 CEP63Q96MT8 703 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 MYOCQ99972 504 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 THAP9Q9H5L6 903 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 FAM204AQ9H8W3 233 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 COX16Q9P0S2 106 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 PPM1HQ9ULR3 514 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 CFAP46Q8IYW2 2715 aa19.96■□□□□ 0.79
CLN3-262ENST00000637699 C1QTNF3-AMACRE9PGA6 284 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 SLC31A1O15431 190 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 P4HA2O15460 535 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 LETM1O95202 739 aaPredicted RBP19.95■□□□□ 0.78
CLN3-262ENST00000637699 MT-CO3P00414 261 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 OXCT1P55809 520 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 CXADRP78310 365 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 E2F1Q01094 437 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 CENPCQ03188 943 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 TLE3Q04726 772 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 ZNF211Q13398 564 aaPredicted RBP19.95■□□□□ 0.78
CLN3-262ENST00000637699 STIM1Q13586 685 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 TBC1D25Q3MII6 688 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 TTC39BQ5VTQ0 682 aaPredicted RBP19.95■□□□□ 0.78
CLN3-262ENST00000637699 FBXL22Q6P050 247 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 OR52K2Q8NGK3 314 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 SPATA20Q8TB22 786 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 ALG14Q96F25 216 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms