RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 LRRC39Q96DD0 335 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 ATG4CQ96DT6 458 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 NEIL1Q96FI4 390 aaPredicted RBP3.12□□□□□ -1.91
VIM-210ENST00000637053 SLC2A13Q96QE2 648 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 RAB3IPQ96QF0 476 aaPredicted RBP3.12□□□□□ -1.91
VIM-210ENST00000637053 WRNIP1Q96S55 665 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 RAD9AQ99638 391 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 NTMT1Q9BV86 223 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 EDEM2Q9BV94 578 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 APOL6Q9BWW8 343 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 STRA6Q9BX79 667 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 MOV10L1Q9BXT6 1211 aaKnown RBP3.12□□□□□ -1.91
VIM-210ENST00000637053 TEX12Q9BXU0 123 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 USP44Q9H0E7 712 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 TFB2MQ9H5Q4 396 aaKnown RBP3.12□□□□□ -1.91
VIM-210ENST00000637053 MVB12BQ9H7P6 319 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 ZNF287Q9HBT7 754 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 IL1RAPL2Q9NP60 686 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 CYP26B1Q9NR63 512 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 AGPAT3Q9NRZ7 376 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 DNAJC28Q9NX36 388 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 OR6C2Q9NZP2 312 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 TMOD2Q9NZR1 351 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 KLHL9Q9P2J3 617 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 MBD2Q9UBB5 411 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 DDX25Q9UHL0 483 aaKnown RBP3.12□□□□□ -1.91
VIM-210ENST00000637053 IPO11Q9UI26 975 aaKnown RBP3.12□□□□□ -1.91
VIM-210ENST00000637053 TMPRSS11EQ9UL52 423 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 KIAA1257Q9ULG3 409 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 RPH3AQ9Y2J0 694 aaPredicted RBP3.12□□□□□ -1.91
VIM-210ENST00000637053 CBY1Q9Y3M2 126 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 TIMM22Q9Y584 194 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 PCDHGA5Q9Y5G8 931 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 GPR45Q9Y5Y3 372 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 FHOD1Q9Y613 1164 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 FPGT-TNNI3KV9GXZ4 949 aa3.12□□□□□ -1.91
VIM-210ENST00000637053 IQANK1A0A1B0GTG1 560 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 SERTM2A0A1B0GWG4 89 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 HEATR9A2RTY3 570 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 DENND3A2RUS2 1198 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 HMX3A6NHT5 357 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 LRRIQ3A6PVS8 624 aaPredicted RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 KPNA7A9QM74 516 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 ZNF879B4DU55 563 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 EIF3CLB5ME19 914 aaKnown RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 DNM1LO00429 736 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 HNRNPDLO14979 420 aaKnown RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 WDR46O15213 610 aaKnown RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 TEX28O15482 410 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 GPR42O15529 346 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 NUDT21O43809 227 aaKnown RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 VEGFDO43915 354 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 GMFGO60234 142 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 IPO13O94829 963 aaKnown RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 SCAF4O95104 1147 aaKnown RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 DIRAS3O95661 229 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 HMGCRP04035 888 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 EPHX1P07099 455 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 WEE2P0C1S8 567 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 SUPT20HL2P0C7V6 817 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 OSMP13725 252 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 NCF1P14598 390 aaPredicted RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 CHRM3P20309 590 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 FGFR2P21802 821 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 TACR1P25103 407 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 PTAFRP25105 342 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 RPL13P26373 211 aaKnown RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 RPA1P27694 616 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 CST5P28325 142 aaPredicted RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 GCH1P30793 250 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 HOXA6P31267 233 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 HOXC8P31273 242 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 NUP62P37198 522 aaPredicted RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 PSMB10P40306 273 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 HTR2BP41595 481 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 IL12RB1P42701 662 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 MTNR1BP49286 362 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 MECP2P51608 486 aaKnown RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 CLCNKAP51800 687 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 METAP1P53582 386 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 PRKAA2P54646 552 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 MFAP3P55082 362 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 ADARP55265 1226 aaKnown RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 UBE2IP63279 158 aaKnown RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 TPM4P67936 248 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 ATP8B2P98198 1209 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 OTUD4Q01804 1114 aaKnown RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 GUCY1A3Q02108 690 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 PRKCEQ02156 737 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 DSC2Q02487 901 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 ASPHQ12797 758 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 NPRL3Q12980 569 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 GRIK3Q13003 919 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 IL24Q13007 206 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 GPS1Q13098 491 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 DNAJC3Q13217 504 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 TNFAIP1Q13829 316 aa3.11□□□□□ -1.91
VIM-210ENST00000637053 DDX39BQ13838 428 aaKnown RBP3.11□□□□□ -1.91
VIM-210ENST00000637053 WDR43Q15061 677 aaKnown RBP eCLIP3.11□□□□□ -1.91
VIM-210ENST00000637053 PDCD1Q15116 288 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms