RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 RNGTTO60942 597 aaKnown RBP15.02■□□□□ -0
CLN3-249ENST00000636685 WT1P19544 449 aaPredicted RBP15.02■□□□□ -0
CLN3-249ENST00000636685 CCR10P46092 362 aa15.02■□□□□ -0
CLN3-249ENST00000636685 CLDN2P57739 230 aa15.02■□□□□ -0
CLN3-249ENST00000636685 SNRPFP62306 86 aaKnown RBP15.02■□□□□ -0
CLN3-249ENST00000636685 ZACNQ401N2 412 aa15.02■□□□□ -0
CLN3-249ENST00000636685 ZNF394Q53GI3 561 aa15.02■□□□□ -0
CLN3-249ENST00000636685 FAM26FQ5R3K3 315 aa15.02■□□□□ -0
CLN3-249ENST00000636685 RNF219Q5W0B1 726 aaPredicted RBP15.02■□□□□ -0
CLN3-249ENST00000636685 PM20D1Q6GTS8 502 aa15.02■□□□□ -0
CLN3-249ENST00000636685 APCDD1Q8J025 514 aa15.02■□□□□ -0
CLN3-249ENST00000636685 HJURPQ8NCD3 748 aaPredicted RBP15.02■□□□□ -0
CLN3-249ENST00000636685 FUCA2Q9BTY2 467 aa15.02■□□□□ -0
CLN3-249ENST00000636685 APOBEC3GQ9HC16 384 aaKnown RBP15.02■□□□□ -0
CLN3-249ENST00000636685 LRRC4CQ9HCJ2 640 aa15.02■□□□□ -0
CLN3-249ENST00000636685 PCDHGA7Q9Y5G6 932 aa15.02■□□□□ -0
CLN3-249ENST00000636685 SRPRBQ9Y5M8 271 aaKnown RBP15.02■□□□□ -0
CLN3-249ENST00000636685 TULP2O00295 520 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 PLD2O14939 933 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 MUSKO15146 869 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 ACSL4O60488 711 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 HLA-DRAP01903 254 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 PIK3CAP42336 1068 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 TAS2R38P59533 333 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 CDH18Q13634 790 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 MANEAQ5SRI9 462 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 BSPRYQ5W0U4 402 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 NADSYN1Q6IA69 706 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 SV2AQ7L0J3 742 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 C12orf56Q8IXR9 622 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 CFAP52Q8N1V2 620 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 FBXO39Q8N4B4 442 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 PDILTQ8N807 584 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 ZNF548Q8NEK5 533 aaPredicted RBP15.01□□□□□ -0.01
CLN3-249ENST00000636685 HEXIM2Q96MH2 286 aaKnown RBP15.01□□□□□ -0.01
CLN3-249ENST00000636685 UBXN6Q9BZV1 441 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 SYNDIG1Q9H7V2 258 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 SRPK3Q9UPE1 567 aa15.01□□□□□ -0.01
CLN3-249ENST00000636685 A0A1W2PQU0 124 aa15□□□□□ -0.01
CLN3-249ENST00000636685 YJEFN3A6XGL0 299 aa15□□□□□ -0.01
CLN3-249ENST00000636685 E7ENQ6 273 aa15□□□□□ -0.01
CLN3-249ENST00000636685 IRAK2O43187 625 aa15□□□□□ -0.01
CLN3-249ENST00000636685 LIPCP11150 499 aa15□□□□□ -0.01
CLN3-249ENST00000636685 HGFP14210 728 aa15□□□□□ -0.01
CLN3-249ENST00000636685 UGT1A5P35504 534 aa15□□□□□ -0.01
CLN3-249ENST00000636685 SLC11A2P49281 568 aa15□□□□□ -0.01
CLN3-249ENST00000636685 HNRNPKP61978 463 aaKnown RBP eCLIP15□□□□□ -0.01
CLN3-249ENST00000636685 NR0B2Q15466 257 aa15□□□□□ -0.01
CLN3-249ENST00000636685 DEFB133Q30KQ1 61 aa15□□□□□ -0.01
CLN3-249ENST00000636685 OR6B2Q6IFH4 312 aa15□□□□□ -0.01
CLN3-249ENST00000636685 GCNT7Q6ZNI0 430 aa15□□□□□ -0.01
CLN3-249ENST00000636685 BRAPQ7Z569 592 aa15□□□□□ -0.01
CLN3-249ENST00000636685 B3GNT8Q7Z7M8 397 aa15□□□□□ -0.01
CLN3-249ENST00000636685 IFT43Q96FT9 208 aa15□□□□□ -0.01
CLN3-249ENST00000636685 SPAG5Q96R06 1193 aa15□□□□□ -0.01
CLN3-249ENST00000636685 IRX2Q9BZI1 471 aaPredicted RBP15□□□□□ -0.01
CLN3-249ENST00000636685 CYP3A43Q9HB55 503 aa15□□□□□ -0.01
CLN3-249ENST00000636685 PREBQ9HCU5 417 aa15□□□□□ -0.01
CLN3-249ENST00000636685 TFIP11Q9UBB9 837 aaKnown RBP15□□□□□ -0.01
CLN3-249ENST00000636685 CENPEQ02224 2701 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 UNC13CQ8NB66 2214 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 MOCS3O95396 460 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 IGLV3-27P01718 113 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 AKT2P31751 481 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 CASRP41180 1078 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 SPIDRQ14159 915 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 NCAPHQ15003 741 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 ZNF284Q2VY69 593 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 FAM46CQ5VWP2 391 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 Q6ZSR6 202 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 RAB11FIP2Q7L804 512 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 PTAR1Q7Z6K3 402 aaPredicted RBP14.99□□□□□ -0.01
CLN3-249ENST00000636685 ABI3BPQ7Z7G0 1075 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 ZSCAN1Q8NBB4 408 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 FRS2Q8WU20 508 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 OR8D1Q8WZ84 308 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 LIN37Q96GY3 246 aaPredicted RBP14.99□□□□□ -0.01
CLN3-249ENST00000636685 EPB41L5Q9HCM4 733 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 NCKIPSDQ9NZQ3 722 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 ACSL6Q9UKU0 697 aa14.99□□□□□ -0.01
CLN3-249ENST00000636685 SPENQ96T58 3664 aaKnown RBP14.98□□□□□ -0.01
CLN3-249ENST00000636685 C2CD3Q4AC94 2353 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 TYW5A2RUC4 315 aaKnown RBP14.98□□□□□ -0.01
CLN3-249ENST00000636685 KRT38O76015 456 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 LUC7L3O95232 432 aaKnown RBP14.98□□□□□ -0.01
CLN3-249ENST00000636685 HNRNPA2B1P22626 353 aaKnown RBP14.98□□□□□ -0.01
CLN3-249ENST00000636685 ADIGQ0VDE8 80 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 MORC3Q14149 939 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 FZD2Q14332 565 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 DSG4Q86SJ6 1040 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 CCDC117Q8IWD4 279 aaPredicted RBP14.98□□□□□ -0.01
CLN3-249ENST00000636685 TATDN2Q93075 761 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 CCDC3Q9BQI4 270 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 NUCKS1Q9H1E3 243 aaKnown RBP14.98□□□□□ -0.01
CLN3-249ENST00000636685 TNMDQ9H2S6 317 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 CGNQ9P2M7 1197 aaKnown RBP14.98□□□□□ -0.01
CLN3-249ENST00000636685 PLEKHB1Q9UF11 243 aaPredicted RBP14.98□□□□□ -0.01
CLN3-249ENST00000636685 KLF15Q9UIH9 416 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 SALL4Q9UJQ4 1053 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 PPM1HQ9ULR3 514 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms