RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 GNA13Q14344 377 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 WDR59Q6PJI9 974 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 KCNK18Q7Z418 384 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 COMMD2Q86X83 199 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 CNBD2Q96M20 576 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 OSBPL6Q9BZF3 934 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 POMKQ9H5K3 350 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 ASB8Q9H765 288 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 F8VP50 259 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 H3BMM5 538 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 CALCAP01258 141 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 NOS3P29474 1203 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 CRYMQ14894 314 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 GPSM1Q86YR5 675 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 REXO1L1PQ8IX06 675 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 RSPH1Q8WYR4 309 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 TMEM120AQ9BXJ8 343 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 PRKAG3Q9UGI9 489 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 POLR1DQ9Y2S0 133 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 COL1A2P08123 1366 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 DNALI1O14645 258 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-219ENST00000620786 XPO1O14980 1071 aaKnown RBP11.57□□□□□ -0.56
CLIP1-219ENST00000620786 TM9SF1O15321 606 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 HS6ST1O60243 411 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 DAB1O75553 588 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 ASGR1P07306 291 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 PEX5P50542 639 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 SMAD3P84022 425 aaKnown RBP11.57□□□□□ -0.56
CLIP1-219ENST00000620786 AGKQ53H12 422 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 GPR158Q5T848 1215 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 SCARA3Q6AZY7 606 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 OTOP2Q7RTS6 562 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 OR8D1Q8WZ84 308 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 SEMA4DQ92854 862 aa11.57□□□□□ -0.56
CLIP1-219ENST00000620786 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-219ENST00000620786 MORC2Q9Y6X9 1032 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-219ENST00000620786 OR6C75A6NL08 312 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 CLDN5O00501 218 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 GUCY1B2O75343 617 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 RBL1P28749 1068 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 SLC1A6P48664 564 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 SHROOM1Q2M3G4 852 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 FGD2Q7Z6J4 655 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 TMPRSS4Q9NRS4 437 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 GPN3Q9UHW5 284 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 SMIM35A0A1B0GVV1 85 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 USP12O75317 370 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 APODP05090 189 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 ZBTB48P10074 688 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 NTSP30990 170 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 OR1D2P34982 312 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 GRM5P41594 1212 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 PIK3CGP48736 1102 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 VAC14Q08AM6 782 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 CNGA2Q16280 664 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 PARP6Q2NL67 630 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 ICE2Q659A1 982 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 FIG4Q92562 907 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 USP6NLQ92738 828 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 PHACTR1Q9C0D0 580 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 PRDM16Q9HAZ2 1276 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 AVENQ9NQS1 362 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 FAM220BPB1ANY3 271 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 PDE2AO00408 941 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 RGS14O43566 566 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 CATP04040 527 aaKnown RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 BRCC3P46736 316 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 GTF2BQ00403 316 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 TRAF2Q12933 501 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 DUSP28Q4G0W2 176 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 TTC33Q6PID6 262 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 METTL6Q8TCB7 284 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 HGH1Q9BTY7 390 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 DDX28Q9NUL7 540 aaKnown RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 CCT8L1PA6NM43 557 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 M0R3G1 203 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 SLURP2P0DP57 97 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 UMPSP11172 480 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 PRLRP16471 622 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 ARHGAP17Q68EM7 881 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 GATAD2AQ86YP4 633 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 VPS33AQ96AX1 596 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 FERD3LQ96RJ6 166 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 RSPH9Q9H1X1 276 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 RERGLQ9H628 205 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 NFKBIL1Q9UBC1 381 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 CYP3A7-CYP3A51PA0A087WV96 503 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 FARP2O94887 1054 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 CYP1A1P04798 512 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 PYGMP11217 842 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 KDELR1P24390 212 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 CYP3A7P24462 503 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 TLX1P31314 330 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 RPA3P35244 121 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 SEC24CP53992 1094 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 PTENP60484 403 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 MRPS15P82914 257 aaKnown RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 NPNTQ6UXI9 565 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 METTL3Q86U44 580 aaKnown RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 SYT12Q8IV01 421 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms