RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CD86P42081 329 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 KPNA1P52294 538 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-213ENST00000620219 PPIGQ13427 754 aaKnown RBP eCLIP16.06■□□□□ 0.161e-9■■■■□ 22
CPSF1-213ENST00000620219 CERCAMQ5T4B2 595 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 LVRNQ6Q4G3 990 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 PSTKQ8IV42 348 aaKnown RBP16.06■□□□□ 0.16
CPSF1-213ENST00000620219 ZNF461Q8TAF7 563 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 TMEM175Q9BSA9 504 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 SLC39A8Q9C0K1 460 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 CAPN7Q9Y6W3 813 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 FAM107AO95990 144 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 XPAP23025 273 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-213ENST00000620219 XRCC4Q13426 336 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 SLC9A4Q6AI14 798 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 ARHGAP36Q6ZRI8 547 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 DCLK2Q8N568 766 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 FAM111AQ96PZ2 611 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 SARS2Q9NP81 518 aaKnown RBP16.06■□□□□ 0.16
CPSF1-213ENST00000620219 RCOR3Q9P2K3 495 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-213ENST00000620219 AFF4Q9UHB7 1163 aaKnown RBP16.06■□□□□ 0.16
CPSF1-213ENST00000620219 HS3ST4Q9Y661 456 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 GJB5O95377 273 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 C8AP07357 584 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 IL4RP24394 825 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 CDK7P50613 346 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 GEMP55040 296 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 QPCTQ16769 361 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 RHBDF2Q6PJF5 856 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 MCUQ8NE86 351 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 OR7D4Q8NG98 312 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 AGR3Q8TD06 166 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 C8orf48Q96LL4 319 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 FRMD8Q9BZ67 464 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-213ENST00000620219 TCRBV9S1A1TA0A576 114 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 CCDC85CA6NKD9 419 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 CNTN5O94779 1100 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 GLUD1P00367 558 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 HAPLN1P10915 354 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-213ENST00000620219 PYGBP11216 843 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 TEX44Q53QW1 395 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 RASIP1Q5U651 963 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 SCD5Q86SK9 330 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 GSDMBQ8TAX9 411 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 TM6SF2Q9BZW4 377 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 LRRC40Q9H9A6 602 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 SLC39A10Q9ULF5 831 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 SSX2IPQ9Y2D8 614 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 MMP13P45452 471 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 NTAN1Q96AB6 310 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 SCML2Q9UQR0 700 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 GOLGA4Q13439 2230 aaKnown RBP16.05■□□□□ 0.16
CPSF1-213ENST00000620219 PER2O15055 1255 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 EFCAB14O75071 495 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 SPAG6O75602 509 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 TROVE2P10155 538 aaKnown RBP eCLIP16.05■□□□□ 0.168e-9■■■■□ 22.1
CPSF1-213ENST00000620219 EZRP15311 586 aaKnown RBP16.05■□□□□ 0.16
CPSF1-213ENST00000620219 VAV1P15498 845 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 RECQLP46063 649 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-213ENST00000620219 PDZD8Q8NEN9 1154 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 ASAH2Q9NR71 780 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 SYBUQ9NX95 663 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 TRHDEQ9UKU6 1024 aa16.05■□□□□ 0.16
CPSF1-213ENST00000620219 TBL1XO60907 577 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 VAPBO95292 243 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 SOD2P04179 222 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 PTPN3P26045 913 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 PGFP49763 221 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 AIF1P55008 147 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 FAM189BP81408 668 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 SMARCB1Q12824 385 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 FBXL22Q6P050 247 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 LINGO4Q6UY18 593 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 KLHL23Q8NBE8 558 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 UXTQ9UBK9 157 aaPredicted RBP16.04■□□□□ 0.16
CPSF1-213ENST00000620219 TET1Q8NFU7 2136 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 A0A0G2JND7 137 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 A0A1W2PRU2 124 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 A8MX80 341 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 MYO1CO00159 1063 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 TIMP1P01033 207 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 FYNP06241 537 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 TACR2P21452 398 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 PTPN7P35236 360 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 MXRA7P84157 204 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 PSMG2Q969U7 264 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 HMCESQ96FZ2 354 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 SEC16BQ96JE7 1060 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 NUDCD1Q96RS6 583 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 CDK5RAP1Q96SZ6 601 aaKnown RBP16.04■□□□□ 0.16
CPSF1-213ENST00000620219 MARCH5Q9NX47 278 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 GON4LQ3T8J9 2241 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 CDH17Q12864 832 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 PABPC1LQ4VXU2 614 aaKnown RBP16.04■□□□□ 0.16
CPSF1-213ENST00000620219 SLC26A11Q86WA9 606 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 ARMC2Q8NEN0 867 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 OR6K2Q8NGY2 324 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 SKA2Q8WVK7 121 aaPredicted RBP16.04■□□□□ 0.16
CPSF1-213ENST00000620219 SEMA3CQ99985 751 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 SMOC2Q9H3U7 446 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 C1QTNF8P60827 252 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms