RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 FTSJ1Q9UET6 329 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 XPO7Q9UIA9 1087 aaKnown RBP12.27□□□□□ -0.45
UPF3B-204ENST00000619445 PCDHGA1Q9Y5H4 931 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 H0Y8X5 98 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 LATO43561 262 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 ATP9BO43861 1147 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 CTSOP43234 321 aaPredicted RBP12.26□□□□□ -0.45
UPF3B-204ENST00000619445 SCAPQ12770 1279 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 AUHQ13825 339 aaKnown RBP12.26□□□□□ -0.45
UPF3B-204ENST00000619445 TAF5Q15542 800 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 CAMK4Q16566 473 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 C5orf22Q49AR2 442 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 LRRC31Q6UY01 552 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 FAM183BPQ6ZVS7 135 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 SLCO6A1Q86UG4 719 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 FAM71AQ8IYT1 594 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 STK40Q8N2I9 435 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 WDTC1Q8N5D0 677 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 PNPLA1Q8N8W4 532 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 MFSD2AQ8NA29 543 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 FRS2Q8WU20 508 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 FAM131CQ96AQ9 280 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 PGAP3Q96FM1 320 aaPredicted RBP12.26□□□□□ -0.45
UPF3B-204ENST00000619445 SERAC1Q96JX3 654 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 FEM1AQ9BSK4 669 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 NDST4Q9H3R1 872 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 MTG2Q9H4K7 406 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 WDCPQ9H6R7 721 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 ACP6Q9NPH0 428 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 SERGEFQ9UGK8 458 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 VPS28Q9UK41 221 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 DNAJC12Q9UKB3 198 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 TBC1D30Q9Y2I9 924 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 PLXNA2O75051 1894 aa12.26□□□□□ -0.45
UPF3B-204ENST00000619445 PLXNB3Q9ULL4 1909 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 SYNJ2BP-COX16A0A087WUM0 186 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TBC1D3DA0A087WVF3 549 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TBC1D3IA0A087WXS9 549 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TBC1D3EA0A087X179 549 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TBC1D3KA0A087X1G2 549 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TBC1D3FA6NER0 549 aaPredicted RBP12.25□□□□□ -0.45
UPF3B-204ENST00000619445 C10orf142B7Z368 130 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TBC1D3LB9A6J9 549 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 M0QYT0 321 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 MCF2LO15068 1137 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 RNGTTO60942 597 aaKnown RBP12.25□□□□□ -0.45
UPF3B-204ENST00000619445 LSM8O95777 96 aaKnown RBP12.25□□□□□ -0.45
UPF3B-204ENST00000619445 ATXN1LP0C7T5 689 aaKnown RBP12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TBC1D3HP0C7X1 549 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 ZNF18P17022 549 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 CDH5P33151 784 aaPredicted RBP12.25□□□□□ -0.45
UPF3B-204ENST00000619445 STK19P49842 368 aaPredicted RBP12.25□□□□□ -0.45
UPF3B-204ENST00000619445 CLCN6P51797 869 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 NME3Q13232 169 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 ACCSLQ4AC99 568 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 SETMARQ53H47 684 aaPredicted RBP12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TBC1D3GQ6DHY5 549 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TBC1D3CQ6IPX1 549 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 NAPEPLDQ6IQ20 393 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 CXorf57Q6NSI4 855 aaKnown RBP12.25□□□□□ -0.45
UPF3B-204ENST00000619445 NEK5Q6P3R8 708 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 GJB7Q6PEY0 223 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 SETD3Q86TU7 594 aaPredicted RBP12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TRIM69Q86WT6 500 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 IRF2BP1Q8IU81 584 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 PASD1Q8IV76 773 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TBC1D3Q8IZP1 549 aaPredicted RBP12.25□□□□□ -0.45
UPF3B-204ENST00000619445 AADATQ8N5Z0 425 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 C1orf74Q96LT6 269 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 SLC6A18Q96N87 628 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 MUC3BQ9H195 1237 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 PREBQ9HCU5 417 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TOR4AQ9NXH8 423 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.25□□□□□ -0.45
UPF3B-204ENST00000619445 COX16Q9P0S2 106 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 VANGL2Q9ULK5 521 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 HS3ST2Q9Y278 367 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 HS3ST4Q9Y661 456 aa12.25□□□□□ -0.45
UPF3B-204ENST00000619445 URB1O60287 2271 aaKnown RBP12.25□□□□□ -0.45
UPF3B-204ENST00000619445 TLR4O00206 839 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 FOXN3O00409 490 aaPredicted RBP12.24□□□□□ -0.45
UPF3B-204ENST00000619445 PLRG1O43660 514 aaKnown RBP12.24□□□□□ -0.45
UPF3B-204ENST00000619445 PAGE1O75459 146 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 CAPNS1P04632 268 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 ITGAVP06756 1048 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 CLCN1P35523 988 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 HNF1BP35680 557 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 GABRB2P47870 512 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 RXRGP48443 463 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 CXCR3P49682 368 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 PITX1P78337 314 aaPredicted RBP12.24□□□□□ -0.45
UPF3B-204ENST00000619445 KCNJ12Q14500 433 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 DLG2Q15700 870 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 SMAD1Q15797 465 aaKnown RBP12.24□□□□□ -0.45
UPF3B-204ENST00000619445 SLC25A52Q3SY17 297 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 PTPN20Q4JDL3 420 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 VWA3BQ502W6 1294 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 C6orf118Q5T5N4 469 aa12.24□□□□□ -0.45
UPF3B-204ENST00000619445 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.24□□□□□ -0.45
UPF3B-204ENST00000619445 ZNF783Q6ZMS7 281 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms