RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CCDC33Q8N5R6 958 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 BEND7Q8N7W2 519 aaPredicted RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 MTMR14Q8NCE2 650 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 C1orf74Q96LT6 269 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 EMILIN2Q9BXX0 1053 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 ACP6Q9NPH0 428 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 WASH6PQ9NQA3 447 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 FARSBQ9NSD9 589 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 RNF146Q9NTX7 359 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 ATAD5Q96QE3 1844 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 EVPLLA8MZ36 301 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 INO80B-WBP1J3KQ70 363 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 CAPNS1P04632 268 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 ATF2P15336 505 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 GAP43P17677 238 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 NELFEP18615 380 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 SERPINB1P30740 379 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 RRM2P31350 389 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 SLC26A3P40879 764 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 GCLMP48507 274 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 RARRES1P49788 294 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 EIF3EP60228 445 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 TNFAIP1Q13829 316 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 SIX1Q15475 284 aaPredicted RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 CCNG2Q16589 344 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 METTL2BQ6P1Q9 378 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 FOXR2Q6PJQ5 311 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 PLEKHG7Q6ZR37 379 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 TMEM26Q6ZUK4 368 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 SYDE1Q6ZW31 735 aaPredicted RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 HAUS6Q7Z4H7 955 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 CHSY1Q86X52 802 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 SLC13A5Q86YT5 568 aaPredicted RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 IFNL1Q8IU54 200 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 GLYCTKQ8IVS8 523 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 HERC6Q8IVU3 1022 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 ZC3H7AQ8IWR0 971 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 FIBCD1Q8N539 461 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 SLC4A11Q8NBS3 891 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 ZSWIM1Q9BR11 485 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 TARS2Q9BW92 718 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 HMG20AQ9NP66 347 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 MAFFQ9ULX9 164 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 ALG6Q9Y672 507 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 MAU2Q9Y6X3 613 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 OR5K4A6NMS3 321 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 VWA5AO00534 786 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 SHOXO15266 292 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 PROCP04070 461 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 P4HBP07237 508 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 SERPINA6P08185 405 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 CCNA2P20248 432 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 MAP4P27816 1152 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 POLD2P49005 469 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 PTK6Q13882 451 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.43□□□□□ -0.74
VPS39-214ENST00000614932 ZFP1Q6P2D0 407 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 ZC3H3Q8IXZ2 948 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 EPS8L1Q8TE68 723 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 FIG4Q92562 907 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 VPS33AQ96AX1 596 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 IER2Q9BTL4 223 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 OSBPL11Q9BXB4 747 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 WDR12Q9GZL7 423 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 NANOGQ9H9S0 305 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 PPCSQ9HAB8 311 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 PTBP2Q9UKA9 531 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 SORCS3Q9UPU3 1222 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 COL2A1P02458 1487 aaPredicted RBP10.42□□□□□ -0.74
VPS39-214ENST00000614932 PCM1Q15154 2024 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 IGSF9BQ9UPX0 1349 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 IQANK1A0A1B0GTG1 560 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 H0YJX3 145 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 PTPN9P43378 593 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 QARSP47897 775 aaKnown RBP10.42□□□□□ -0.74
VPS39-214ENST00000614932 FMO5P49326 533 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 FSTL1Q12841 308 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 DRAP1Q14919 205 aaPredicted RBP10.42□□□□□ -0.74
VPS39-214ENST00000614932 SNX17Q15036 470 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 DUSP7Q16829 419 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 HSF5Q4G112 596 aaPredicted RBP10.42□□□□□ -0.74
VPS39-214ENST00000614932 SNAP47Q5SQN1 464 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 SHEQ5VZ18 495 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 BTLAQ7Z6A9 289 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 AFAP1L2Q8N4X5 818 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 SIMC1Q8NDZ2 872 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 AFG1LQ8WV93 481 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 KAT5Q92993 513 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 DCPSQ96C86 337 aaKnown RBP10.42□□□□□ -0.74
VPS39-214ENST00000614932 SNX18Q96RF0 628 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 PDCD2LQ9BRP1 358 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 ACAT2Q9BWD1 397 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 NPLQ9BXD5 320 aaPredicted RBP10.42□□□□□ -0.74
VPS39-214ENST00000614932 COPS7BQ9H9Q2 264 aaPredicted RBP10.42□□□□□ -0.74
VPS39-214ENST00000614932 SLC17A7Q9P2U7 560 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 PSMC3IPQ9P2W1 217 aaPredicted RBP10.42□□□□□ -0.74
VPS39-214ENST00000614932 SLC24A2Q9UI40 661 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 AP3M1Q9Y2T2 418 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 KIF13BQ9NQT8 1826 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms