RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ZFRQ96KR1 1074 aaKnown RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 DHRS4Q9BTZ2 278 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 DRC3Q9H069 523 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 MINDY3Q9H8M7 445 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 ELP3Q9H9T3 547 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 MRPL40Q9NQ50 206 aaKnown RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 C6orf203Q9P0P8 240 aaPredicted RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 TNFSF13BQ9Y275 285 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 ASB3Q9Y575 518 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 CNTNAP1P78357 1384 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 MAST2Q6P0Q8 1798 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 SPDYE16A6NNV3 312 aaPredicted RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 PAMP19021 973 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 HSPA13P48723 471 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 CCNA1P78396 465 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 CACNB2Q08289 660 aaPredicted RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 BST2Q10589 180 aaKnown RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 SPANXN3Q5MJ09 141 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 TWF2Q6IBS0 349 aaKnown RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 LCLAT1Q6UWP7 414 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 FAM43BQ6ZT52 329 aaPredicted RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 REPS2Q8NFH8 660 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 RMND5BQ96G75 393 aaPredicted RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 KCTD15Q96SI1 283 aaPredicted RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 CHRAC1Q9NRG0 131 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 TMPRSS4Q9NRS4 437 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 AP4S1Q9Y587 144 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 ANGPT2O15123 496 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 PIGRP01833 764 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 FGF3P11487 239 aaPredicted RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 DCTN2Q13561 401 aaKnown RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 CCNIQ14094 377 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 UGP2Q16851 508 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 LSM12Q3MHD2 195 aaKnown RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 FSTL4Q6MZW2 842 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 ZFP1Q6P2D0 407 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 GK5Q6ZS86 529 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 RAB44Q7Z6P3 723 aaPredicted RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 ACTRT2Q8TDY3 377 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 CIB1Q99828 191 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 RTKNQ9BST9 563 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 STN1Q9H668 368 aaKnown RBP12.84□□□□□ -0.35
LIG1-221ENST00000613670 NCKIPSDQ9NZQ3 722 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 SIX4Q9UIU6 781 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 KLHL33A6NCF5 533 aa12.83□□□□□ -0.35
LIG1-221ENST00000613670 ZNF839A8K0R7 811 aa12.83□□□□□ -0.35
LIG1-221ENST00000613670 CRTAMO95727 393 aa12.83□□□□□ -0.35
LIG1-221ENST00000613670 ALDOAP04075 364 aaKnown RBP12.83□□□□□ -0.35
LIG1-221ENST00000613670 ARF4P18085 180 aaPredicted RBP12.83□□□□□ -0.35
LIG1-221ENST00000613670 TPSB2P20231 275 aa12.83□□□□□ -0.35
LIG1-221ENST00000613670 MAP3K7CLP57077 242 aa12.83□□□□□ -0.35
LIG1-221ENST00000613670 PLIN5Q00G26 463 aa12.83□□□□□ -0.35
LIG1-221ENST00000613670 YWHAHQ04917 246 aaPredicted RBP12.83□□□□□ -0.35
LIG1-221ENST00000613670 TPSAB1Q15661 275 aa12.83□□□□□ -0.35
LIG1-221ENST00000613670 GPR141Q7Z602 305 aa12.83□□□□□ -0.35
LIG1-221ENST00000613670 NIFKQ9BYG3 293 aaKnown RBP12.83□□□□□ -0.35
LIG1-221ENST00000613670 CCDC68Q9H2F9 335 aa12.83□□□□□ -0.35
LIG1-221ENST00000613670 XPR1Q9UBH6 696 aa12.83□□□□□ -0.35
LIG1-221ENST00000613670 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.83□□□□□ -0.36
LIG1-221ENST00000613670 UBDO15205 165 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 HCRTO43612 131 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 MPOP05164 745 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 TFEBP19484 476 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 ACADSBP45954 432 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 BAG6P46379 1132 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 CLDN10P78369 228 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 FASTKQ14296 549 aaKnown RBP12.83□□□□□ -0.36
LIG1-221ENST00000613670 PCLAFQ15004 111 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 FUT11Q495W5 492 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 NAPEPLDQ6IQ20 393 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 UBR7Q8N806 425 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 MZB1Q8WU39 189 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 CCDC90BQ9GZT6 254 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 PAIP1Q9H074 479 aaKnown RBP12.83□□□□□ -0.36
LIG1-221ENST00000613670 SPATC1LQ9H0A9 340 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 LIN28AQ9H9Z2 209 aaKnown RBP12.83□□□□□ -0.36
LIG1-221ENST00000613670 TIMM13Q9Y5L4 95 aaPredicted RBP12.83□□□□□ -0.36
LIG1-221ENST00000613670 HEATR9A2RTY3 570 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 TRPC5OSA6NMA1 111 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 CAPN14A8MX76 684 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 NR5A2O00482 541 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 GNGT2O14610 69 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 LTFP02788 710 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 APOA4P06727 396 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 CYP2C8P10632 490 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 PPARGP37231 505 aaPredicted RBP12.83□□□□□ -0.36
LIG1-221ENST00000613670 PSME3P61289 254 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 CMPK2Q5EBM0 449 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 ACBD5Q5T8D3 534 aaPredicted RBP12.83□□□□□ -0.36
LIG1-221ENST00000613670 CATSPERGQ6ZRH7 1159 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 PLD6Q8N2A8 252 aaKnown RBP12.83□□□□□ -0.36
LIG1-221ENST00000613670 PPHLN1Q8NEY8 458 aaKnown RBP12.83□□□□□ -0.36
LIG1-221ENST00000613670 ATP6V1E2Q96A05 226 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 DNAJC28Q9NX36 388 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 MORF4L1Q9UBU8 362 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 CNTN6Q9UQ52 1028 aa12.83□□□□□ -0.36
LIG1-221ENST00000613670 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.83□□□□□ -0.36
LIG1-221ENST00000613670 ZBTB7AO95365 584 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 EEF1DP29692 281 aaKnown RBP12.82□□□□□ -0.36
LIG1-221ENST00000613670 ZNF460Q14592 562 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms