RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RAPGEFL1Q9UHV5 662 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 RAD54BQ9Y620 910 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 DUSP10Q9Y6W6 482 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 CHD5Q8TDI0 1954 aa16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 BTNL10A8MVZ5 291 aa16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 ARHGAP6O43182 974 aa16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 BUB1BO60566 1050 aaPredicted RBP16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 SRPRAP08240 638 aaKnown RBP16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 PRKCHP24723 683 aa16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 PTPN5P54829 565 aa16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 DMWDQ09019 674 aa16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 KIAA1211LQ6NV74 962 aa16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 POLNQ7Z5Q5 900 aa16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 KIAA1328Q86T90 577 aa16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 KDM1BQ8NB78 822 aa16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 RPL10LQ96L21 214 aaKnown RBP16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 C2orf49Q9BVC5 232 aaPredicted RBP16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 FAM126AQ9BYI3 521 aaPredicted RBP16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 POLMQ9NP87 494 aaPredicted RBP16.96■□□□□ 0.31
CCDC28A-202ENST00000611852 APBB3O95704 486 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 KRT7P08729 469 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 HLA-EP13747 358 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 GJC1P36383 396 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 SLC1A1P43005 524 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 PXNP49023 591 aaPredicted RBP16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 STK19P49842 368 aaPredicted RBP16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 ARSEP51690 589 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 ST8SIA6P61647 398 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 CCZ1BP86790 482 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 CCZ1P86791 482 aaPredicted RBP16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 DPYSQ14117 519 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 ZNF366Q8N895 744 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 DCAF4L2Q8NA75 395 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 FAM71BQ8TC56 605 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 MAGEH1Q9H213 219 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 NOL6Q9H6R4 1146 aaKnown RBP16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 PCDH18Q9HCL0 1135 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 VPS51Q9UID3 782 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 SLCO3A1Q9UIG8 710 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 HYOU1Q9Y4L1 999 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 ADGRG1Q9Y653 693 aa16.96■□□□□ 0.3
CCDC28A-202ENST00000611852 CKAP5Q14008 2032 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 A0A0U1RQJ8 604 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 TCRBV21S2A2A0A5A6 115 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 H3BRJ5 948 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 DAPK3O43293 454 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 BUB1O43683 1085 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 SNAP91O60641 907 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 RAMP2O60895 175 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 EPHX1P07099 455 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 ERCC2P18074 760 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 COMTP21964 271 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 ACVRL1P37023 503 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 ETFBP38117 255 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 ARL4AP40617 200 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 VASPP50552 380 aaPredicted RBP16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 NRLP54845 237 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 CDH6P55285 790 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 STARD3Q14849 445 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 RASSF3Q86WH2 238 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 UMODL1-AS1Q8N2C9 162 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 TXLNBQ8N3L3 684 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 ZBTB44Q8NCP5 570 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 TPCN2Q8NHX9 752 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 ATRIPQ8WXE1 791 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 TSC1Q92574 1164 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 ARHGEF2Q92974 986 aaKnown RBP16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 ERLEC1Q96DZ1 483 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 CSPG4P5Q96PW8 444 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 SPON2Q9BUD6 331 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 ACE2Q9BYF1 805 aaPredicted RBP16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 IRF2BPLQ9H1B7 796 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 GOLPH3Q9H4A6 298 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 ATP13A1Q9HD20 1204 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 EBF1Q9UH73 591 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 ALG6Q9Y672 507 aa16.95■□□□□ 0.3
CCDC28A-202ENST00000611852 CCDC163A0A0D9SF12 145 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 SYNCRIPO60506 623 aaKnown RBP16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 ZMPSTE24O75844 475 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 CD48P09326 243 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 GLDCP23378 1020 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 IL4RP24394 825 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 FNTBP49356 437 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 CCDC173Q0VFZ6 552 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 KIF5AQ12840 1032 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 KRT81Q14533 505 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 POLD3Q15054 466 aaPredicted RBP16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 LRRC38Q5VT99 294 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 HEATR6Q6AI08 1181 aaKnown RBP16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 ANO7Q6IWH7 933 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 C11orf63Q6NUN7 778 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 MDGA1Q8NFP4 955 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 CALR3Q96L12 384 aaKnown RBP16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 KLC2Q9H0B6 622 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 KLHL11Q9NVR0 708 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 ZSCAN32Q9NX65 697 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 DONSONQ9NYP3 566 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 RCOR3Q9P2K3 495 aaPredicted RBP16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 SLC25A13Q9UJS0 675 aa16.94■□□□□ 0.3
CCDC28A-202ENST00000611852 HS3ST2Q9Y278 367 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms