RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TMEM117Q9H0C3 514 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 PPCSQ9HAB8 311 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 RBM12Q9NTZ6 932 aaKnown RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 TBCCD1Q9NVR7 557 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 THG1LQ9NWX6 298 aaKnown RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 OBP2AQ9NY56 170 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 MAP3K20Q9NYL2 800 aaKnown RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 LRIT1Q9P2V4 623 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 USP25Q9UHP3 1055 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 EVLQ9UI08 416 aaPredicted RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 TAGLN3Q9UI15 199 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 NOB1Q9ULX3 412 aaKnown RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 ZFP37Q9Y6Q3 630 aaPredicted RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 SCINQ9Y6U3 715 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 MYH4Q9Y623 1939 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 PCNX1Q96RV3 2341 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 NAV3Q8IVL0 2385 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 TRABD2BA6NFA1 517 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 LRRC3CA6NJW4 275 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 TGM5O43548 720 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 PRKAB2O43741 272 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 ABLIM3O94929 683 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 GGPS1O95749 300 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 CNPP09543 421 aaKnown RBP4.85□□□□□ -1.63
LINC00540-201ENST00000611481 FTH1P19P0C7X4 201 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 CHRNB1P11230 501 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 MYF5P13349 255 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 MCCP23508 829 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 ADSSP30520 456 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 EIF2S3P41091 472 aaKnown RBP4.85□□□□□ -1.63
LINC00540-201ENST00000611481 SLC1A4P43007 532 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 HTR3AP46098 478 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 MRPS35P82673 323 aaKnown RBP4.85□□□□□ -1.63
LINC00540-201ENST00000611481 DSG1Q02413 1049 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 EXOSC9Q06265 439 aaKnown RBP4.85□□□□□ -1.63
LINC00540-201ENST00000611481 SEMA3BQ13214 749 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 ELF2Q15723 593 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 STXBP2Q15833 593 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 CELF3Q5SZQ8 465 aaKnown RBP4.85□□□□□ -1.63
LINC00540-201ENST00000611481 ATXN7L2Q5T6C5 722 aaPredicted RBP4.85□□□□□ -1.63
LINC00540-201ENST00000611481 LCE1AQ5T7P2 110 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 SYDE2Q5VT97 1194 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 ABHD15Q6UXT9 468 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 CYP26C1Q6V0L0 522 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 TMEM173Q86WV6 379 aaPredicted RBP4.85□□□□□ -1.63
LINC00540-201ENST00000611481 SPATS2Q86XZ4 545 aaKnown RBP4.85□□□□□ -1.63
LINC00540-201ENST00000611481 NXPE1Q8N323 547 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 MYRIPQ8NFW9 859 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 JPH3Q8WXH2 748 aaPredicted RBP4.85□□□□□ -1.63
LINC00540-201ENST00000611481 CASD1Q96PB1 797 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 RHOBTB2Q9BYZ6 727 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 FAM49AQ9H0Q0 323 aaPredicted RBP4.85□□□□□ -1.63
LINC00540-201ENST00000611481 KMT5AQ9NQR1 393 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 KLHL11Q9NVR0 708 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 TMEM161AQ9NX61 479 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 ZNF69Q9UC07 566 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 PRSS50Q9UI38 385 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 TMPRSS11EQ9UL52 423 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 CDH7Q9ULB5 785 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 TRPV2Q9Y5S1 764 aa4.85□□□□□ -1.63
LINC00540-201ENST00000611481 GREB1LQ9C091 1923 aaPredicted RBP4.85□□□□□ -1.63
LINC00540-201ENST00000611481 BAZ2AQ9UIF9 1905 aaKnown RBP4.85□□□□□ -1.63
LINC00540-201ENST00000611481 GOLGA4Q13439 2230 aaKnown RBP4.84□□□□□ -1.63
LINC00540-201ENST00000611481 CACNA1DQ01668 2161 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 CCDC171Q6TFL3 1326 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 FANCIQ9NVI1 1328 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 IGSF9BQ9UPX0 1349 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 M0QZ92 97 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 DCLK1O15075 740 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 PJA2O43164 708 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 PRPF3O43395 683 aaKnown RBP4.84□□□□□ -1.63
LINC00540-201ENST00000611481 TMEM127O75204 238 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 RHOBTB1O94844 696 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 TTLL1O95922 423 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 ELANEP08246 267 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 UBTFL1P0CB47 393 aaPredicted RBP4.84□□□□□ -1.63
LINC00540-201ENST00000611481 HOXA6P31267 233 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 LSP1P33241 339 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 TRAPPC10P48553 1259 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 KPNA1P52294 538 aaPredicted RBP4.84□□□□□ -1.63
LINC00540-201ENST00000611481 POLGP54098 1239 aaPredicted RBP4.84□□□□□ -1.63
LINC00540-201ENST00000611481 CLRN1P58418 232 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 CXADRP78310 365 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 PHC1P78364 1004 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 STAT4Q14765 748 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 PRAMEF14Q5SWL7 426 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 UTP14CQ5TAP6 766 aaKnown RBP4.84□□□□□ -1.63
LINC00540-201ENST00000611481 TSHZ3Q63HK5 1081 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 SLC24A5Q71RS6 500 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 SMAP1Q8IYB5 467 aaPredicted RBP4.84□□□□□ -1.63
LINC00540-201ENST00000611481 FAM9BQ8IZU0 186 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 HDDC3Q8N4P3 179 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 ZNF610Q8N9Z0 462 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 OR14C36Q8NHC7 312 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 FGF13Q92913 245 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 ZBTB10Q96DT7 871 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 TAAR1Q96RJ0 339 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 SARGQ9BW04 601 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 REXO4Q9GZR2 422 aaKnown RBP4.84□□□□□ -1.63
LINC00540-201ENST00000611481 NT5C3AQ9H0P0 336 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms