RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 FAM81BQ96LP2 452 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 MED15Q96RN5 788 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 ORAI3Q9BRQ5 295 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 ABCG4Q9H172 646 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 DYRK4Q9NR20 520 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.5□□□□□ -1.371e-6■■■□□ 15.1
CUX1-220ENST00000607092 STIM2Q9P246 746 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 ARMCX3Q9UH62 379 aaPredicted RBP6.5□□□□□ -1.37
CUX1-220ENST00000607092 SFMBT1Q9UHJ3 866 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 CYTH4Q9UIA0 394 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 HOOK1Q9UJC3 728 aaKnown RBP6.5□□□□□ -1.37
CUX1-220ENST00000607092 SLC25A13Q9UJS0 675 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 ERVW-1Q9UQF0 538 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 PAXBP1Q9Y5B6 917 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 MYO9AB2RTY4 2548 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 A0A1B0GVM2 712 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 TCAF2A6NFQ2 919 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 C10orf142B7Z368 130 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 PMM2O15305 246 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 MSI1O43347 362 aaKnown RBP6.49□□□□□ -1.37
CUX1-220ENST00000607092 MED7O43513 233 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 PLRG1O43660 514 aaKnown RBP6.49□□□□□ -1.37
CUX1-220ENST00000607092 TLX3O43711 291 aaPredicted RBP6.49□□□□□ -1.37
CUX1-220ENST00000607092 BRINP1O60477 761 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 SMC2O95347 1197 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 CKMT1AP12532 417 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 LCP1P13796 627 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 PLA2G2AP14555 144 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 PFKFB1P16118 471 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 ITPKBP27987 946 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 MZF1P28698 734 aaPredicted RBP6.49□□□□□ -1.37
CUX1-220ENST00000607092 RBMS1P29558 406 aaKnown RBP6.49□□□□□ -1.37
CUX1-220ENST00000607092 AKT2P31751 481 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 LSSP48449 732 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 RPIAP49247 311 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 PLK1P53350 603 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 HNRNPKP61978 463 aaKnown RBP eCLIP6.49□□□□□ -1.375e-6■■□□□ 11.9
CUX1-220ENST00000607092 CXADRP78310 365 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 KRT85P78386 507 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 LRRC63Q05C16 580 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 DNAJC3Q13217 504 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 KCNJ12Q14500 433 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 PROX2Q3B8N5 592 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 ZCWPW2Q504Y3 356 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 ARSIQ5FYB1 569 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 DCAF17Q5H9S7 520 aaPredicted RBP6.49□□□□□ -1.37
CUX1-220ENST00000607092 RFWD3Q6PCD5 774 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 TMEM270Q6UE05 265 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.49□□□□□ -1.37
CUX1-220ENST00000607092 BHLHA9Q7RTU4 235 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 CHSY1Q86X52 802 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 HSCBQ8IWL3 235 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 GRAMD1CQ8IYS0 662 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 ZNF843Q8N446 348 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 OR4C6Q8NH72 309 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 STK32AQ8WU08 396 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 SLC35F5Q8WV83 523 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 GLMNQ92990 594 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 SNX21Q969T3 373 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 FAM131CQ96AQ9 280 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 ELMO3Q96BJ8 720 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 FAM149B1Q96BN6 582 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 MYO19Q96H55 970 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 PPP1R16AQ96I34 528 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 MRGPRX3Q96LB0 322 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 SPATA32Q96LK8 384 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 NT5C1BQ96P26 610 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 FAM129BQ96TA1 746 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 SCAND2PQ9GZW5 306 aaPredicted RBP6.49□□□□□ -1.37
CUX1-220ENST00000607092 POLR1BQ9H9Y6 1135 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 KLHL11Q9NVR0 708 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 SLCO1B1Q9Y6L6 691 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 AHCTF1Q8WYP5 2266 aa6.49□□□□□ -1.37
CUX1-220ENST00000607092 TEX15Q9BXT5 2789 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 ARID1BQ8NFD5 2236 aaPredicted RBP6.48□□□□□ -1.37
CUX1-220ENST00000607092 FAM237AA0A1B0GTK4 181 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 A0A1B0GVL5 298 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 A0A1W2PQ27 194 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 A0A1W2PQ64 194 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 TTC34A8MYJ7 566 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 H3BM21 787 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 TMX2-CTNND1H3BSU7 103 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 M0QYV0 167 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 MCF2LO15068 1137 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 CLDN11O75508 207 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 PRNPP04156 253 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 WNT1P04628 370 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 GLI1P08151 1106 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 CCR1P32246 355 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 RECQLP46063 649 aaPredicted RBP6.48□□□□□ -1.37
CUX1-220ENST00000607092 INHBCP55103 352 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 PRSS12P56730 875 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 RPS24P62847 133 aaKnown RBP6.48□□□□□ -1.37
CUX1-220ENST00000607092 YWHAZP63104 245 aaKnown RBP6.48□□□□□ -1.37
CUX1-220ENST00000607092 KRT83P78385 493 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 CDK17Q00537 523 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 INSM1Q01101 510 aaPredicted RBP6.48□□□□□ -1.37
CUX1-220ENST00000607092 GCNT1Q02742 428 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 VAC14Q08AM6 782 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 CCDC173Q0VFZ6 552 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms