RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 FAM72DQ6L9T8 149 aa12□□□□□ -0.49
VRK3-223ENST00000601341 C4orf22Q6V702 233 aa12□□□□□ -0.49
VRK3-223ENST00000601341 FAM72BQ86X60 149 aa12□□□□□ -0.49
VRK3-223ENST00000601341 TMC8Q8IU68 726 aa12□□□□□ -0.49
VRK3-223ENST00000601341 PARP9Q8IXQ6 854 aa12□□□□□ -0.49
VRK3-223ENST00000601341 LEMD2Q8NC56 503 aa12□□□□□ -0.49
VRK3-223ENST00000601341 RSAD2Q8WXG1 361 aa12□□□□□ -0.49
VRK3-223ENST00000601341 PPP2R3CQ969Q6 453 aa12□□□□□ -0.49
VRK3-223ENST00000601341 HAUS1Q96CS2 278 aa12□□□□□ -0.49
VRK3-223ENST00000601341 CORO1BQ9BR76 489 aa12□□□□□ -0.49
VRK3-223ENST00000601341 TMEM121Q9BTD3 319 aa12□□□□□ -0.49
VRK3-223ENST00000601341 LRRC3Q9BY71 257 aa12□□□□□ -0.49
VRK3-223ENST00000601341 SIK2Q9H0K1 926 aa12□□□□□ -0.49
VRK3-223ENST00000601341 ARHGEF4Q9NR80 690 aa12□□□□□ -0.49
VRK3-223ENST00000601341 ZDHHC7Q9NXF8 308 aa12□□□□□ -0.49
VRK3-223ENST00000601341 ZNF638Q14966 1978 aaKnown RBP11.99□□□□□ -0.49
VRK3-223ENST00000601341 CFAP69A5D8W1 941 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 C2orf78A6NCI8 922 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 MCF2LO15068 1137 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 ATP5HO75947 161 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 FAM155BO75949 473 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 LRIG2O94898 1065 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 HMBSP08397 361 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 CREB1P16220 341 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 PTPN2P17706 415 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 TAC1P20366 129 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 AMPD1P23109 780 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 NR2C2P49116 596 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 HARS2P49590 506 aaKnown RBP11.99□□□□□ -0.49
VRK3-223ENST00000601341 RGS19P49795 217 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 MNAT1P51948 309 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 MLLT6P55198 1093 aaPredicted RBP11.99□□□□□ -0.49
VRK3-223ENST00000601341 NRG1Q02297 640 aaPredicted RBP11.99□□□□□ -0.49
VRK3-223ENST00000601341 DPYSQ14117 519 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 SNCBQ16143 134 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 PDK4Q16654 411 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 SPRED3Q2MJR0 410 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 ADGRD1Q6QNK2 874 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 GAREM2Q75VX8 874 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 ADGRD2Q7Z7M1 963 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 ZBED8Q8IZ13 594 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 HS6ST3Q8IZP7 471 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 PDIK1LQ8N165 341 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 GLIS1Q8NBF1 620 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 ZNF398Q8TD17 642 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 MRPL38Q96DV4 380 aaKnown RBP11.99□□□□□ -0.49
VRK3-223ENST00000601341 FAM118BQ9BPY3 351 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 RNF38Q9H0F5 515 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 ATXN3LQ9H3M9 355 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 ACSS3Q9H6R3 686 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 DNAJC17Q9NVM6 304 aaKnown RBP11.99□□□□□ -0.49
VRK3-223ENST00000601341 SAE1Q9UBE0 346 aaPredicted RBP11.99□□□□□ -0.49
VRK3-223ENST00000601341 GBF1Q92538 1859 aa11.99□□□□□ -0.49
VRK3-223ENST00000601341 EPOPA6NHQ4 379 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 TM9SF1O15321 606 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 POU2F2P09086 479 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 MYL4P12829 197 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 PFKLP17858 780 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 HDCP19113 662 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 EPHB2P29323 1055 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 NRIP1P48552 1158 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 EPHA5P54756 1037 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 PDIA2Q13087 525 aaKnown RBP11.98□□□□□ -0.49
VRK3-223ENST00000601341 LRRC14Q15048 493 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 TMED2Q15363 201 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 DUSP6Q16828 381 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 C1orf228Q6PIY5 440 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 CHRDL2Q6WN34 429 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 PDZD4Q76G19 769 aaPredicted RBP11.98□□□□□ -0.49
VRK3-223ENST00000601341 BZW1Q7L1Q6 419 aaKnown RBP11.98□□□□□ -0.49
VRK3-223ENST00000601341 ANKRD42Q8N9B4 389 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 CCDC63Q8NA47 563 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 PYROXD1Q8WU10 500 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 CPT1BQ92523 772 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 PLD4Q96BZ4 506 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 RTP4Q96DX8 246 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 PWWP2AQ96N64 755 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 CDCA3Q99618 268 aaPredicted RBP11.98□□□□□ -0.49
VRK3-223ENST00000601341 PRKD2Q9BZL6 878 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 TRABDQ9H4I3 376 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 TRPC7Q9HCX4 862 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 HEY1Q9Y5J3 304 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 HS3ST4Q9Y661 456 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 MYO7AQ13402 2215 aa11.98□□□□□ -0.49
VRK3-223ENST00000601341 A0A1W2PRU2 124 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 CHADO15335 359 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 TYROBPO43914 113 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 OLFM2O95897 454 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 ZSCAN5DPP0CG00 497 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 SRGAP2BP0DMP2 458 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 MBL2P11226 248 aaPredicted RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 ERCC2P18074 760 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 KRT15P19012 456 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 SLC11A2P49281 568 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 KCNQ1P51787 676 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 WDR4P57081 412 aaKnown RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 EIF3EP60228 445 aaKnown RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 NOMO1Q15155 1222 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 PIK3R6Q5UE93 754 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 NCBP2-AS2Q69YL0 99 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms