RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 STK19P49842 368 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-215ENST00000601150 VASPP50552 380 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-215ENST00000601150 ACAP1Q15027 740 aa17.29■□□□□ 0.36
TRIM28-215ENST00000601150 ASTE1Q2TB18 679 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-215ENST00000601150 PMS2CLQ68D20 193 aa17.29■□□□□ 0.36
TRIM28-215ENST00000601150 SLC36A4Q6YBV0 504 aa17.29■□□□□ 0.36
TRIM28-215ENST00000601150 PYROXD2Q8N2H3 581 aa17.29■□□□□ 0.36
TRIM28-215ENST00000601150 FRMD1Q8N878 549 aa17.29■□□□□ 0.36
TRIM28-215ENST00000601150 MRFAP1L1Q96HT8 127 aa17.29■□□□□ 0.36
TRIM28-215ENST00000601150 CHP1Q99653 195 aa17.29■□□□□ 0.36
TRIM28-215ENST00000601150 ANP32EQ9BTT0 268 aa17.29■□□□□ 0.36
TRIM28-215ENST00000601150 C2orf49Q9BVC5 232 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-215ENST00000601150 MTG2Q9H4K7 406 aa17.29■□□□□ 0.36
TRIM28-215ENST00000601150 TMEM248Q9NWD8 314 aa17.29■□□□□ 0.36
TRIM28-215ENST00000601150 MBD1Q9UIS9 605 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-215ENST00000601150 CYP8B1Q9UNU6 501 aa17.29■□□□□ 0.36
TRIM28-215ENST00000601150 NEU3Q9UQ49 428 aa17.29■□□□□ 0.36
TRIM28-215ENST00000601150 GPR179Q6PRD1 2367 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 IGHV1OR15-9A0A0B4J2B8 117 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 A0A0D9SEW6 157 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 EDDM13A0A1B0GTR0 161 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 TARSL2A2RTX5 802 aaKnown RBP17.28■□□□□ 0.36
TRIM28-215ENST00000601150 PRPSAP2O60256 369 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 SIN3BO75182 1162 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 EPN2O95208 641 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 MIPP30301 263 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 MAPKAPK2P49137 400 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 PIGHQ14442 188 aaPredicted RBP17.28■□□□□ 0.36
TRIM28-215ENST00000601150 LPCAT2Q7L5N7 544 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 NLRP14Q86W24 1093 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 ARFGAP1Q8N6T3 406 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 DCAF4L2Q8NA75 395 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 CTNNBL1Q8WYA6 563 aaPredicted RBP17.28■□□□□ 0.36
TRIM28-215ENST00000601150 ARHGEF26Q96DR7 871 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 CCDC42Q96M95 316 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 PSMB7Q99436 277 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 EPAS1Q99814 870 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 NUP85Q9BW27 656 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 NHEJ1Q9H9Q4 299 aaPredicted RBP17.28■□□□□ 0.36
TRIM28-215ENST00000601150 ITM2CQ9NQX7 267 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 USP36Q9P275 1121 aaKnown RBP17.28■□□□□ 0.36
TRIM28-215ENST00000601150 PCSK1NQ9UHG2 260 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 AP4E1Q9UPM8 1137 aa17.28■□□□□ 0.36
TRIM28-215ENST00000601150 EIF3CLB5ME19 914 aaKnown RBP17.27■□□□□ 0.36
TRIM28-215ENST00000601150 CREB3O43889 395 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 LRCH4O75427 683 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 H2AFZP0C0S5 128 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 C7P10643 843 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 ACADMP11310 421 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 EPHB2P29323 1055 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 HTR7P34969 479 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 PCK1P35558 622 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 ETFBP38117 255 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 RPS14P62263 151 aaKnown RBP17.27■□□□□ 0.36
TRIM28-215ENST00000601150 GNA12Q03113 381 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 ZBTB16Q05516 673 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 SEMA3BQ13214 749 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 ERMARDQ5T6L9 678 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 C9orf64Q5T6V5 341 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 ZNF776Q68DI1 518 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-215ENST00000601150 H2AFVQ71UI9 128 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 CACUL1Q86Y37 369 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 GPR161Q8N6U8 529 aaKnown RBP17.27■□□□□ 0.36
TRIM28-215ENST00000601150 OR7D4Q8NG98 312 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 PEBP4Q96S96 227 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 EIF3CQ99613 913 aaKnown RBP17.27■□□□□ 0.36
TRIM28-215ENST00000601150 SPON2Q9BUD6 331 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 RSPH9Q9H1X1 276 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-215ENST00000601150 DHX35Q9H5Z1 703 aaKnown RBP17.27■□□□□ 0.36
TRIM28-215ENST00000601150 CD93Q9NPY3 652 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 IP6K2Q9UHH9 426 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 DNAI1Q9UI46 699 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 VPS51Q9UID3 782 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 ANAPC7Q9UJX3 599 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 HS3ST2Q9Y278 367 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 PCDHGA5Q9Y5G8 931 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 ZNF292O60281 2723 aa17.27■□□□□ 0.36
TRIM28-215ENST00000601150 EP300Q09472 2414 aaPredicted RBP17.27■□□□□ 0.35
TRIM28-215ENST00000601150 USP34Q70CQ2 3546 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 ATP9BO43861 1147 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 SNAP91O60641 907 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 RNASEH1O60930 286 aaKnown RBP17.26■□□□□ 0.35
TRIM28-215ENST00000601150 LRP3O75074 770 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 IGLV3-19P01714 112 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 OXTRP30559 389 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 TPMTP51580 245 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 RPL6Q02878 288 aaKnown RBP17.26■□□□□ 0.35
TRIM28-215ENST00000601150 SPEM2Q0P670 501 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 ACCSLQ4AC99 568 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 SPDYCQ5MJ68 293 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 PSTKQ8IV42 348 aaKnown RBP17.26■□□□□ 0.35
TRIM28-215ENST00000601150 SH2D3CQ8N5H7 860 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 NIPA2Q8N8Q9 360 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 RTL3Q8N8U3 475 aaKnown RBP17.26■□□□□ 0.35
TRIM28-215ENST00000601150 TC2NQ8N9U0 490 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 FRS2Q8WU20 508 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 PTPRN2Q92932 1015 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 SNRNP25Q9BV90 132 aaKnown RBP17.26■□□□□ 0.35
TRIM28-215ENST00000601150 PACSIN1Q9BY11 444 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 CATSPERBQ9H7T0 1116 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms