RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 CDY1Q9Y6F8 540 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 IGKV6D-21A0A0A0MT36 114 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 LACTBL1A8MY62 500 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 DENRO43583 198 aaKnown RBP18.72■□□□□ 0.59
UPF1-210ENST00000600689 ENDOD1O94919 500 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 PIGNO95427 931 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 LCP1P13796 627 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 CLCN3P51790 818 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 NAGLUP54802 743 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 EPGNQ6UW88 154 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 RIOX2Q8IUF8 465 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 ZBTB8OSQ8IWT0 167 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 TSPAN14Q8NG11 270 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 LRTOMTQ8WZ04 291 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 COQ10BQ9H8M1 238 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 UBP1Q9NZI7 540 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 RIMS3Q9UJD0 308 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 SLC39A10Q9ULF5 831 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 THRAP10827 490 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 TGM2P21980 687 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 DBN1Q16643 649 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 BOLA3Q53S33 107 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 LRRC39Q96DD0 335 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 FCRL3Q96P31 734 aaPredicted RBP18.72■□□□□ 0.59
UPF1-210ENST00000600689 CIB1Q99828 191 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 OMDQ99983 421 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 FERMT1Q9BQL6 677 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 RBM38Q9H0Z9 239 aaKnown RBP18.72■□□□□ 0.59
UPF1-210ENST00000600689 TASP1Q9H6P5 420 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 SUDS3Q9H7L9 328 aaPredicted RBP18.72■□□□□ 0.59
UPF1-210ENST00000600689 CDH2P19022 906 aaPredicted RBP18.72■□□□□ 0.59
UPF1-210ENST00000600689 FUT4P22083 530 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 CCR3P51677 355 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 CCDC185Q8N715 623 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 MCUQ8NE86 351 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 PDCD6IPQ8WUM4 868 aaKnown RBP18.72■□□□□ 0.59
UPF1-210ENST00000600689 CPB2Q96IY4 423 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 TMEM79Q9BSE2 394 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 NIFKQ9BYG3 293 aaKnown RBP18.72■□□□□ 0.59
UPF1-210ENST00000600689 MINDY3Q9H8M7 445 aa18.72■□□□□ 0.59
UPF1-210ENST00000600689 ARHGEF37A1IGU5 675 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 C7orf72A4D263 438 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 SH3BGRP55822 239 aaPredicted RBP18.71■□□□□ 0.59
UPF1-210ENST00000600689 ITGA7Q13683 1181 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 HTR3CQ8WXA8 447 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 ZFRQ96KR1 1074 aaKnown RBP18.71■□□□□ 0.59
UPF1-210ENST00000600689 PLEKHG4BQ96PX9 1271 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 FRMD8Q9BZ67 464 aaPredicted RBP18.71■□□□□ 0.59
UPF1-210ENST00000600689 DTLQ9NZJ0 730 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 EPS15L1Q9UBC2 864 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 AP4E1Q9UPM8 1137 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 PCDHB12Q9Y5F1 795 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 PLOD2O00469 737 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 CILPO75339 1184 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 ENTPD1P49961 510 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 AP3M2P53677 418 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 ENPEPQ07075 957 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 TARBP2Q15633 366 aaKnown RBP18.71■□□□□ 0.59
UPF1-210ENST00000600689 ZNF423Q2M1K9 1284 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 PITRM1Q5JRX3 1037 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 PPP1R26Q5T8A7 1209 aaPredicted RBP18.71■□□□□ 0.59
UPF1-210ENST00000600689 GK5Q6ZS86 529 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 KBTBD7Q8WVZ9 684 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 HPDLQ96IR7 371 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 NRBP2Q9NSY0 501 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 GMPR2Q9P2T1 348 aaKnown RBP18.71■□□□□ 0.59
UPF1-210ENST00000600689 CEPT1Q9Y6K0 416 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 PAPPA2Q9BXP8 1791 aa18.71■□□□□ 0.59
UPF1-210ENST00000600689 RGSL1A5PLK6 1076 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 RNF103O00237 685 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 TPST1O60507 370 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 PDGFRBP09619 1106 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 CKMT2P17540 419 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 ZNF460Q14592 562 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 LPIN1Q14693 890 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 PDK2Q15119 407 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 ANKDD1AQ495B1 522 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 ARL13AQ5H913 290 aaPredicted RBP18.7■□□□□ 0.58
UPF1-210ENST00000600689 MTX3Q5HYI7 312 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 FSTL4Q6MZW2 842 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 C16orf89Q6UX73 402 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 PID1Q7Z2X4 250 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 ARNTL2Q8WYA1 636 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 COPS5Q92905 334 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 MFSD3Q96ES6 412 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 SIKE1Q9BRV8 207 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 RAB26Q9ULW5 256 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 SNX9Q9Y5X1 595 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 LOC285556D6RIA3 1793 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 ME2P23368 584 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 EDNRBP24530 442 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 MAGEA3P43357 314 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 HARS2P49590 506 aaKnown RBP18.7■□□□□ 0.58
UPF1-210ENST00000600689 CDK18Q07002 472 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 NIPAL4Q0D2K0 466 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 ZPBP2Q6X784 338 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 TIFABQ6ZNK6 161 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 RPS27LQ71UM5 84 aaKnown RBP18.7■□□□□ 0.58
UPF1-210ENST00000600689 SULF1Q8IWU6 871 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 ILKAPQ9H0C8 392 aaPredicted RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms