RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ATMINO43313 823 aaPredicted RBP16.63■□□□□ 0.25
LSM4-206ENST00000600289 SYNCRIPO60506 623 aaKnown RBP16.63■□□□□ 0.25
LSM4-206ENST00000600289 CNTN5O94779 1100 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 EPN2O95208 641 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 EPHX1P07099 455 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 PLEKP08567 350 aaPredicted RBP16.63■□□□□ 0.25
LSM4-206ENST00000600289 COPAP53621 1224 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 LIMK1P53667 647 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 ECT2LQ008S8 904 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 OGDHQ02218 1023 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 ALFQ53S48 1182 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 SPDYCQ5MJ68 293 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 PMS2CLQ68D20 193 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 IL31Q6EBC2 164 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 ZNF783Q6ZMS7 281 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 TMC6Q7Z403 805 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 KBTBD6Q86V97 674 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 APCDD1Q8J025 514 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 CCDC185Q8N715 623 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 OR8K1Q8NGG5 319 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 ZNF653Q96CK0 615 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 FEM1AQ9BSK4 669 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 ZYG11BQ9C0D3 744 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 SUN2Q9UH99 717 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 NEU3Q9UQ49 428 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 ERVW-1Q9UQF0 538 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 PCDHGA5Q9Y5G8 931 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 SNX10Q9Y5X0 201 aa16.63■□□□□ 0.25
LSM4-206ENST00000600289 A0A087X0T9 212 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 SSU72P8A0A1W2PR75 194 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 SRRM3A6NNA2 597 aaPredicted RBP16.62■□□□□ 0.25
LSM4-206ENST00000600289 MFAP3LO75121 409 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 RHOBTB1O94844 696 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 IGLV3-19P01714 112 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 TPM1P09493 284 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 FAM228BP0C875 321 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 MZF1P28698 734 aaPredicted RBP16.62■□□□□ 0.25
LSM4-206ENST00000600289 ST8SIA6P61647 398 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 TBX2Q13207 712 aaPredicted RBP16.62■□□□□ 0.25
LSM4-206ENST00000600289 MAPK8IP2Q13387 824 aaPredicted RBP16.62■□□□□ 0.25
LSM4-206ENST00000600289 ELF2Q15723 593 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 HNRNPA1L2Q32P51 320 aaKnown RBP16.62■□□□□ 0.25
LSM4-206ENST00000600289 C6orf118Q5T5N4 469 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 SLFN11Q7Z7L1 901 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 PGBD3Q8N328 593 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 OR52K2Q8NGK3 314 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 OR2T3Q8NH03 318 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 MKRN2Q9H000 416 aaKnown RBP16.62■□□□□ 0.25
LSM4-206ENST00000600289 PRDM16Q9HAZ2 1276 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 ABHD10Q9NUJ1 306 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 USP36Q9P275 1121 aaKnown RBP16.62■□□□□ 0.25
LSM4-206ENST00000600289 OR12D3Q9UGF7 316 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 LHX6Q9UPM6 363 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 ADAMTS20P59510 1910 aa16.62■□□□□ 0.25
LSM4-206ENST00000600289 CXorf51AA0A1B0GTR3 108 aa16.61■□□□□ 0.25
LSM4-206ENST00000600289 TARSL2A2RTX5 802 aaKnown RBP16.61■□□□□ 0.25
LSM4-206ENST00000600289 EIF3CLB5ME19 914 aaKnown RBP16.61■□□□□ 0.25
LSM4-206ENST00000600289 DCLK1O15075 740 aa16.61■□□□□ 0.25
LSM4-206ENST00000600289 HLA-EP13747 358 aa16.61■□□□□ 0.25
LSM4-206ENST00000600289 L1CAMP32004 1257 aa16.61■□□□□ 0.25
LSM4-206ENST00000600289 ZNF252P-AS1Q0IIN9 211 aa16.61■□□□□ 0.25
LSM4-206ENST00000600289 ASTE1Q2TB18 679 aaPredicted RBP16.61■□□□□ 0.25
LSM4-206ENST00000600289 EFHC2Q5JST6 749 aa16.61■□□□□ 0.25
LSM4-206ENST00000600289 ALKBH5Q6P6C2 394 aaKnown RBP16.61■□□□□ 0.25
LSM4-206ENST00000600289 SLC36A4Q6YBV0 504 aa16.61■□□□□ 0.25
LSM4-206ENST00000600289 CNGA4Q8IV77 575 aa16.61■□□□□ 0.25
LSM4-206ENST00000600289 EIF3CQ99613 913 aaKnown RBP16.61■□□□□ 0.25
LSM4-206ENST00000600289 NCAPGQ9BPX3 1015 aa16.61■□□□□ 0.25
LSM4-206ENST00000600289 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.61■□□□□ 0.25
LSM4-206ENST00000600289 PRSS16Q9NQE7 514 aa16.61■□□□□ 0.25
LSM4-206ENST00000600289 MPP6Q9NZW5 540 aa16.61■□□□□ 0.25
LSM4-206ENST00000600289 MBD1Q9UIS9 605 aaPredicted RBP16.61■□□□□ 0.25
LSM4-206ENST00000600289 FZD10Q9ULW2 581 aa16.61■□□□□ 0.25
LSM4-206ENST00000600289 ABCA7Q8IZY2 2146 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 MAST4O15021 2626 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 IGHV1OR15-9A0A0B4J2B8 117 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 ILVBLA1L0T0 632 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 TAF4O00268 1085 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 AP5Z1O43299 807 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 SRGAP2O75044 1071 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 LRIG2O94898 1065 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 ZIC2O95409 532 aaPredicted RBP16.6■□□□□ 0.25
LSM4-206ENST00000600289 RHOCP08134 193 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 RHOQP17081 205 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 BCKDHBP21953 392 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 PSMA2P25787 234 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 HTR7P34969 479 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 CTSOP43234 321 aaPredicted RBP16.6■□□□□ 0.25
LSM4-206ENST00000600289 MAPKAPK2P49137 400 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 ZBTB16Q05516 673 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 SEMA3BQ13214 749 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 SLC18A3Q16572 532 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 RNF219Q5W0B1 726 aaPredicted RBP16.6■□□□□ 0.25
LSM4-206ENST00000600289 NLRP14Q86W24 1093 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 DNAAF5Q86Y56 855 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 TMPRSS6Q8IU80 811 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 DCAF4L2Q8NA75 395 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 PRCCQ92733 491 aaPredicted RBP16.6■□□□□ 0.25
LSM4-206ENST00000600289 TBC1D31Q96DN5 1066 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 C2orf49Q9BVC5 232 aaPredicted RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms