RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CAAP1Q9H8G2 361 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 FANCFQ9NPI8 374 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 ZBTB39O15060 712 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 TBL1XO60907 577 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 KCNJ1P48048 391 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 MPPE1Q53F39 396 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 PARP9Q8IXQ6 854 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 SHDQ96IW2 340 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 RBM12Q9NTZ6 932 aaKnown RBP20.8■□□□□ 0.92
UPF1-207ENST00000599848 MORC2Q9Y6X9 1032 aaPredicted RBP20.8■□□□□ 0.92
UPF1-207ENST00000599848 SLIT1O75093 1534 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 NWD1Q149M9 1564 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 E2F8A0AVK6 867 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 IRF8Q02556 426 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 TUSC3Q13454 348 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 MCEMP1Q8IX19 187 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 METTL6Q8TCB7 284 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 ERP27Q96DN0 273 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 FAM111AQ96PZ2 611 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 GPR88Q9GZN0 384 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 POLR1BQ9H9Y6 1135 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 SNUPNO95149 360 aaKnown RBP20.8■□□□□ 0.92
UPF1-207ENST00000599848 ANXA6P08133 673 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 RPL21P46778 160 aaKnown RBP20.8■□□□□ 0.92
UPF1-207ENST00000599848 PARP6Q2NL67 630 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 FAM98BQ52LJ0 330 aaKnown RBP20.8■□□□□ 0.92
UPF1-207ENST00000599848 MAGED4Q96JG8 741 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 SMIM31A0A1B0GVY4 71 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 SEC22BO75396 215 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 PLEKP08567 350 aaPredicted RBP20.79■□□□□ 0.92
UPF1-207ENST00000599848 SMAD3P84022 425 aaKnown RBP20.79■□□□□ 0.92
UPF1-207ENST00000599848 CNGA2Q16280 664 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 WDR36Q8NI36 951 aaKnown RBP20.79■□□□□ 0.92
UPF1-207ENST00000599848 MGRN1O60291 552 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 SLC25A12O75746 678 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 FAAH2Q6GMR7 532 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 GPSM1Q86YR5 675 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 APOL2Q9BQE5 337 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 EPB41L4BQ9H329 900 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 ZNHIT2Q9UHR6 403 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 CD3EAPO15446 510 aaKnown RBP20.79■□□□□ 0.92
UPF1-207ENST00000599848 ZNF23P17027 643 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 RALGDSQ12967 914 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 FUT11Q495W5 492 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 VSTM1Q6UX27 236 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 RNASE11Q8TAA1 199 aaKnown RBP20.79■□□□□ 0.92
UPF1-207ENST00000599848 FAM118BQ9BPY3 351 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 PRRG4Q9BZD6 226 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 C3orf14Q9HBI5 128 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 PEX1O43933 1283 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 TRUB2O95900 331 aaKnown RBP20.79■□□□□ 0.92
UPF1-207ENST00000599848 SMIM11AP58511 58 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 DUSP28Q4G0W2 176 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 PHYKPLQ8IUZ5 450 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 DENND6AQ8IWF6 608 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 KLF6Q99612 283 aaPredicted RBP20.79■□□□□ 0.92
UPF1-207ENST00000599848 ST3GAL5Q9UNP4 418 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 MFHAS1Q9Y4C4 1052 aa20.79■□□□□ 0.92
UPF1-207ENST00000599848 POU1F1P28069 291 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 SYT12Q8IV01 421 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 KCNS3Q9BQ31 491 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 AP4S1Q9Y587 144 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 AAK1Q2M2I8 961 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 BRMS1LQ5PSV4 323 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 TTC23Q5W5X9 447 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 ATG16L2Q8NAA4 619 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 PPTC7Q8NI37 304 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 GRIN3AQ8TCU5 1115 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 CYP4F12Q9HCS2 524 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 TBC1D23Q9NUY8 699 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 HNMTP50135 292 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 TTC33Q6PID6 262 aaPredicted RBP20.78■□□□□ 0.92
UPF1-207ENST00000599848 ACTL9Q8TC94 416 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 PACSIN1Q9BY11 444 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 IL22Q9GZX6 179 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 CLK2P49760 499 aaKnown RBP20.78■□□□□ 0.92
UPF1-207ENST00000599848 ITGA1P56199 1179 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 STX4Q12846 297 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 USP4Q13107 963 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 ATP13A4Q4VNC1 1196 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 SLC24A5Q71RS6 500 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 EMC1Q8N766 993 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 METTL21AQ8WXB1 218 aa20.78■□□□□ 0.92
UPF1-207ENST00000599848 XPO1O14980 1071 aaKnown RBP20.77■□□□□ 0.92
UPF1-207ENST00000599848 GRM5P41594 1212 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 CASP4P49662 377 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 FAM187BQ17R55 369 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 PLPP4Q5VZY2 271 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 WSCD1Q658N2 575 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 LPCAT2Q7L5N7 544 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 TDRD5Q8NAT2 981 aaKnown RBP20.77■□□□□ 0.92
UPF1-207ENST00000599848 ACTRT1Q8TDG2 376 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 ZCWPW1Q9H0M4 648 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 ASB8Q9H765 288 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 POLE3Q9NRF9 147 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 SLITRK3O94933 977 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 S100A3P33764 101 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 PCID2Q5JVF3 399 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 ZNF470Q6ECI4 717 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 ULK2Q8IYT8 1036 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms