RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 SMAD6O43541 496 aaKnown RBP14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 ASLP04424 464 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 EPHX1P07099 455 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 CD48P09326 243 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 NDUFV2P19404 249 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 NBL1P41271 181 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 COPAP53621 1224 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 GNA12Q03113 381 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 BOLA3Q53S33 107 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 PPP6R3Q5H9R7 873 aaPredicted RBP14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 SDE2Q6IQ49 451 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 SERPINA13PQ6UXR4 307 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 LINGO4Q6UY18 593 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 LONP2Q86WA8 852 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 PSTKQ8IV42 348 aaKnown RBP14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 TP53INP2Q8IXH6 220 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 RHOT2Q8IXI1 618 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 RTL3Q8N8U3 475 aaKnown RBP14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 FRS2Q8WU20 508 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 HMGB4Q8WW32 186 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 RLN3Q8WXF3 142 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 ARHGEF2Q92974 986 aaKnown RBP14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 EPAS1Q99814 870 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 DESI2Q9BSY9 194 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 SPON2Q9BUD6 331 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 ACE2Q9BYF1 805 aaPredicted RBP14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 MKRN2Q9H000 416 aaKnown RBP14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 MUC3BQ9H195 1237 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 GOLPH3Q9H4A6 298 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 PCDH18Q9HCL0 1135 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 PRSS16Q9NQE7 514 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 ETNK2Q9NVF9 386 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 VPS51Q9UID3 782 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 VPS28Q9UK41 221 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 EEF2KO00418 725 aaKnown RBP14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 NPC1O15118 1278 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 MOCS3O95396 460 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 SRPRAP08240 638 aaKnown RBP14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 DESP17661 470 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 ERCC2P18074 760 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 AMPD1P23109 780 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 OXCT1P55809 520 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 TPI1P60174 286 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 MMRN1Q13201 1228 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 CAMK2GQ13555 558 aaPredicted RBP14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 DPYSQ14117 519 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 SPA17Q15506 151 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 DPYSL2Q16555 572 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 C6orf118Q5T5N4 469 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 C9orf64Q5T6V5 341 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 LEKR1Q6ZMV7 388 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 RFX8Q6ZV50 586 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 POLNQ7Z5Q5 900 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 FAM71BQ8TC56 605 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 TEKT4Q8WW24 435 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 TSC1Q92574 1164 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 PTPRN2Q92932 1015 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 MRGPRX1Q96LB2 322 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 NCAPGQ9BPX3 1015 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 FAM126AQ9BYI3 521 aaPredicted RBP14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 POLMQ9NP87 494 aaPredicted RBP14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 KLHL11Q9NVR0 708 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 PCDHGA2Q9Y5H1 932 aa14.56□□□□□ -0.08
SHKBP1-217ENST00000598558 MUC22E2RYF6 1773 aaPredicted RBP14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 CCDC163A0A0D9SF12 145 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 BUB1BO60566 1050 aaPredicted RBP14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 SIN3BO75182 1162 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 SRCP12931 536 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 MAN1A1P33908 653 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 GJC1P36383 396 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 ARHGAP25P42331 645 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 SSR1P43307 286 aaKnown RBP14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 HCAR3P49019 387 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 MAPKAPK2P49137 400 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 NRLP54845 237 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 HADHBP55084 474 aaKnown RBP14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 ARF5P84085 180 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 HNRNPA1L2Q32P51 320 aaKnown RBP14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 ZNF783Q6ZMS7 281 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 ARHGAP12Q8IWW6 846 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 UMODL1-AS1Q8N2C9 162 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 FAM160A2Q8N612 972 aaPredicted RBP14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 NPWQ8N729 165 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 DCAF4L2Q8NA75 395 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 KDM1BQ8NB78 822 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 RAPGEF5Q92565 580 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 HMCESQ96FZ2 354 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 CELF6Q96J87 481 aaKnown RBP14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 CSPG4P5Q96PW8 444 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 FAM129BQ96TA1 746 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 LRRC19Q9H756 370 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 TRIM10Q9UDY6 481 aa14.55□□□□□ -0.08
SHKBP1-217ENST00000598558 CACNA1HO95180 2353 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 RASA4BC9J798 803 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 RNF103O00237 685 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 CBX4O00257 560 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 PJA2O43164 708 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 RASA4O43374 803 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 BUB1O43683 1085 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms