RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 MYO15AQ9UKN7 3530 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 A0A1B0GVM2 712 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 TYW5A2RUC4 315 aaKnown RBP15.4■□□□□ 0.06
TRIM28-207ENST00000597136 TCAF2A6NFQ2 919 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 WASH3PC4AMC7 463 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 CES2O00748 559 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 LRIG2O94898 1065 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 PABPC1P11940 636 aaKnown RBP15.4■□□□□ 0.06
TRIM28-207ENST00000597136 MZF1P28698 734 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-207ENST00000597136 WASP42768 502 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 COPS2P61201 443 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 SEMA3BQ13214 749 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 DPYSL3Q14195 570 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 KRT81Q14533 505 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 FBXO43Q4G163 708 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 PPP6R3Q5H9R7 873 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-207ENST00000597136 DNTTIP2Q5QJE6 756 aaKnown RBP15.4■□□□□ 0.06
TRIM28-207ENST00000597136 AADACL2Q6P093 401 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 TSSK4Q6SA08 328 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 CHST9Q7L1S5 443 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 ANKS1BQ7Z6G8 1248 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 TFAP2DQ7Z6R9 452 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 MAP7D3Q8IWC1 876 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 SPEM1Q8N4L4 309 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 IL17RCQ8NAC3 791 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 TSC1Q92574 1164 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 ERLEC1Q96DZ1 483 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 NDFIP2Q9NV92 336 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 ELOVL2Q9NXB9 296 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 ZNF212Q9UDV6 495 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 GGA2Q9UJY4 613 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 STARD13Q9Y3M8 1113 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 USP34Q70CQ2 3546 aa15.4■□□□□ 0.06
TRIM28-207ENST00000597136 SGK1O00141 431 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 ZNF185O15231 689 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 CEP104O60308 925 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 URI1O94763 535 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-207ENST00000597136 KLF8O95600 359 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-207ENST00000597136 HNRNPLP14866 589 aaKnown RBP eCLIP15.39■□□□□ 0.05
TRIM28-207ENST00000597136 IL4RP24394 825 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 CDKN2BP42772 138 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 SATB1Q01826 763 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 NRG1Q02297 640 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-207ENST00000597136 MMRN1Q13201 1228 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 CDH18Q13634 790 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 TAZQ16635 292 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 FUT11Q495W5 492 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 PREPLQ4J6C6 727 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-207ENST00000597136 RWDD4Q6NW29 188 aaKnown RBP15.39■□□□□ 0.05
TRIM28-207ENST00000597136 SPOCD1Q6ZMY3 1216 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 VSIG1Q86XK7 387 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 CCDC50Q8IVM0 306 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 C1orf210Q8IVY1 113 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.39■□□□□ 0.05
TRIM28-207ENST00000597136 ZNF513Q8N8E2 541 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-207ENST00000597136 CYB5D2Q8WUJ1 264 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 CALN1Q9BXU9 219 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 PLXND1Q9Y4D7 1925 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 PI4KAP42356 2102 aa15.39■□□□□ 0.05
TRIM28-207ENST00000597136 FRYLO94915 3013 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-207ENST00000597136 ZNF487B1APH4 448 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 CHURC1-FNTBB4DL54 471 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 CREB3O43889 395 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 ADAM23O75077 832 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 CLDN11O75508 207 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 CSKP41240 450 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 CTSOP43234 321 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-207ENST00000597136 CDH4P55283 916 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 MRPS21P82921 87 aaKnown RBP15.38■□□□□ 0.05
TRIM28-207ENST00000597136 ZNF177Q13360 481 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-207ENST00000597136 ACBD5Q5T8D3 534 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-207ENST00000597136 TTC39BQ5VTQ0 682 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-207ENST00000597136 MBLAC2Q68D91 279 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 TXNDC5Q8NBS9 432 aaKnown RBP15.38■□□□□ 0.05
TRIM28-207ENST00000597136 ALG14Q96F25 216 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 MS4A14Q96JA4 679 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 EPAS1Q99814 870 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 ZNF670Q9BS34 389 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 CIPCQ9C0C6 399 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 ZYG11BQ9C0D3 744 aa15.38■□□□□ 0.05
TRIM28-207ENST00000597136 CWC15Q9P013 229 aaKnown RBP15.38■□□□□ 0.05
TRIM28-207ENST00000597136 KIAA1522Q9P206 1035 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-207ENST00000597136 PPARGC1AQ9UBK2 798 aaKnown RBP15.38■□□□□ 0.05
TRIM28-207ENST00000597136 GALR2O43603 387 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-207ENST00000597136 GOT1P17174 413 aa15.37■□□□□ 0.05
TRIM28-207ENST00000597136 PTPN7P35236 360 aa15.37■□□□□ 0.05
TRIM28-207ENST00000597136 CETN2P41208 172 aa15.37■□□□□ 0.05
TRIM28-207ENST00000597136 MAGEA9P43362 315 aa15.37■□□□□ 0.05
TRIM28-207ENST00000597136 HCAR3P49019 387 aa15.37■□□□□ 0.05
TRIM28-207ENST00000597136 ZNF135P52742 658 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-207ENST00000597136 LLGL1Q15334 1064 aa15.37■□□□□ 0.05
TRIM28-207ENST00000597136 PPP2R5EQ16537 467 aa15.37■□□□□ 0.05
TRIM28-207ENST00000597136 ANKRD20A8PQ5CZ79 823 aa15.37■□□□□ 0.05
TRIM28-207ENST00000597136 TFDP3Q5H9I0 405 aa15.37■□□□□ 0.05
TRIM28-207ENST00000597136 PITRM1Q5JRX3 1037 aa15.37■□□□□ 0.05
TRIM28-207ENST00000597136 SEL1L2Q5TEA6 688 aa15.37■□□□□ 0.05
TRIM28-207ENST00000597136 RNF219Q5W0B1 726 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-207ENST00000597136 TMEM92Q6UXU6 159 aa15.37■□□□□ 0.05
TRIM28-207ENST00000597136 NUDT18Q6ZVK8 323 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms