RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TMEM248Q9NWD8 314 aa14.94□□□□□ -0.02
VRK3-206ENST00000594090 GPATCH2LQ9NWQ4 482 aa14.94□□□□□ -0.02
VRK3-206ENST00000594090 NCDNQ9UBB6 729 aa14.94□□□□□ -0.02
VRK3-206ENST00000594090 SUN2Q9UH99 717 aa14.94□□□□□ -0.02
VRK3-206ENST00000594090 PCSK1NQ9UHG2 260 aa14.94□□□□□ -0.02
VRK3-206ENST00000594090 SLCO3A1Q9UIG8 710 aa14.94□□□□□ -0.02
VRK3-206ENST00000594090 SLC25A13Q9UJS0 675 aa14.94□□□□□ -0.02
VRK3-206ENST00000594090 GMEB2Q9UKD1 530 aa14.94□□□□□ -0.02
VRK3-206ENST00000594090 AP4E1Q9UPM8 1137 aa14.94□□□□□ -0.02
VRK3-206ENST00000594090 ILVBLA1L0T0 632 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 TTC34A8MYJ7 566 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 CREB3O43889 395 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 PRPSAP2O60256 369 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 ZNF217O75362 1048 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 H2AFZP0C0S5 128 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 PCK1P35558 622 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 VASPP50552 380 aaPredicted RBP14.93□□□□□ -0.02
VRK3-206ENST00000594090 KRT83P78385 493 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 PIGHQ14442 188 aaPredicted RBP14.93□□□□□ -0.02
VRK3-206ENST00000594090 ELF2Q15723 593 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 ERMARDQ5T6L9 678 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 PMS2CLQ68D20 193 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 H2AFVQ71UI9 128 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 CACUL1Q86Y37 369 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 FRMD1Q8N878 549 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 NIPA2Q8N8Q9 360 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 OR7D4Q8NG98 312 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 ZNF564Q8TBZ8 553 aaPredicted RBP14.93□□□□□ -0.02
VRK3-206ENST00000594090 CTNNBL1Q8WYA6 563 aaPredicted RBP14.93□□□□□ -0.02
VRK3-206ENST00000594090 PRCCQ92733 491 aaPredicted RBP14.93□□□□□ -0.02
VRK3-206ENST00000594090 SIPA1Q96FS4 1042 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 BTBD6Q96KE9 485 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 HINFPQ9BQA5 517 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 C2orf49Q9BVC5 232 aaPredicted RBP14.93□□□□□ -0.02
VRK3-206ENST00000594090 DUSP15Q9H1R2 295 aaPredicted RBP14.93□□□□□ -0.02
VRK3-206ENST00000594090 NDFIP2Q9NV92 336 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 USP36Q9P275 1121 aaKnown RBP14.93□□□□□ -0.02
VRK3-206ENST00000594090 IP6K2Q9UHH9 426 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 VPS51Q9UID3 782 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 MBD1Q9UIS9 605 aaPredicted RBP14.93□□□□□ -0.02
VRK3-206ENST00000594090 USP18Q9UMW8 372 aa14.93□□□□□ -0.02
VRK3-206ENST00000594090 IGHV1OR15-9A0A0B4J2B8 117 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 EDDM13A0A1B0GTR0 161 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 TARSL2A2RTX5 802 aaKnown RBP14.92□□□□□ -0.02
VRK3-206ENST00000594090 SNAP91O60641 907 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 SIN3BO75182 1162 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 TMEM253P0C7T8 217 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 C7P10643 843 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 EPHB2P29323 1055 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 NNMTP40261 264 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 TPI1P60174 286 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 GNA12Q03113 381 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 CA9Q16790 459 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 C9orf64Q5T6V5 341 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 METTL3Q86U44 580 aaKnown RBP14.92□□□□□ -0.02
VRK3-206ENST00000594090 RTL3Q8N8U3 475 aaKnown RBP14.92□□□□□ -0.02
VRK3-206ENST00000594090 DHX35Q9H5Z1 703 aaKnown RBP14.92□□□□□ -0.02
VRK3-206ENST00000594090 CTTNBP2NLQ9P2B4 639 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 UVRAGQ9P2Y5 699 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 DNAI1Q9UI46 699 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 CHD5Q8TDI0 1954 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 EIF3CLB5ME19 914 aaKnown RBP14.92□□□□□ -0.02
VRK3-206ENST00000594090 MYO1FO00160 1098 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 ATP9BO43861 1147 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 RHOBTB1O94844 696 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 RETP07949 1114 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 ACADMP11310 421 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 TCF4P15884 667 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 GLDCP23378 1020 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 IL1R2P27930 398 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 HTR7P34969 479 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 RPS14P62263 151 aaKnown RBP14.92□□□□□ -0.02
VRK3-206ENST00000594090 PSTKQ8IV42 348 aaKnown RBP14.92□□□□□ -0.02
VRK3-206ENST00000594090 DCLK2Q8N568 766 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 SH2D3CQ8N5H7 860 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 FRS2Q8WU20 508 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 LOXL4Q96JB6 756 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 KCTD15Q96SI1 283 aaPredicted RBP14.92□□□□□ -0.02
VRK3-206ENST00000594090 EIF3CQ99613 913 aaKnown RBP14.92□□□□□ -0.02
VRK3-206ENST00000594090 CATSPERBQ9H7T0 1116 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 ATP13A1Q9HD20 1204 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 CYP8B1Q9UNU6 501 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 HS3ST2Q9Y278 367 aa14.92□□□□□ -0.02
VRK3-206ENST00000594090 SPAG17Q6Q759 2223 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 WASH4PA8MWX3 477 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 FGF10O15520 208 aaPredicted RBP14.91□□□□□ -0.02
VRK3-206ENST00000594090 RAMP2O60895 175 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 EPN2O95208 641 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 SRCP12931 536 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 VAV1P15498 845 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 ETFBP38117 255 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 TPMTP51580 245 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 SMTNL2Q2TAL5 461 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 ZNF776Q68DI1 518 aaPredicted RBP14.91□□□□□ -0.02
VRK3-206ENST00000594090 IL31Q6EBC2 164 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 SLC36A4Q6YBV0 504 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 PTPRN2Q92932 1015 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 ARHGEF2Q92974 986 aaKnown RBP14.91□□□□□ -0.02
VRK3-206ENST00000594090 SPON2Q9BUD6 331 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 ACE2Q9BYF1 805 aaPredicted RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms