RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 LIPMQ5VYY2 423 aa4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 FAAH2Q6GMR7 532 aa4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 SERPINA13PQ6UXR4 307 aa4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 KYAT3Q6YP21 454 aaKnown RBP4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 SYNE3Q6ZMZ3 975 aa4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 LRRC8DQ7L1W4 858 aa4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 RSRC2Q7L4I2 434 aaKnown RBP4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 SKA1Q96BD8 255 aa4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 RBM17Q96I25 401 aaKnown RBP4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 KAZALD1Q96I82 304 aa4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 ZNF845Q96IR2 970 aaPredicted RBP4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 HIPK2Q9H2X6 1198 aa4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 ERVK-5Q9HDB9 667 aa4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 PNMA2Q9UL42 364 aa4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 SPATA31A5Q5VU36 1347 aa4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 SPATA31A7Q8IWB4 1347 aa4.12□□□□□ -1.75
SMCHD1-209ENST00000583441 PRSS47A8MTI9 375 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 TARM1B6A8C7 271 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 POC1B-GALNT4F8VUJ3 575 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 GRM8O00222 908 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 KLK10O43240 276 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 OAZ2O95190 189 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 MBD4O95243 580 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 SGPL1O95470 568 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 METTL18O95568 372 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 CSF1P09603 554 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 PGM1P36871 562 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 CASP2P42575 452 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 LIFRP42702 1097 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 AGTR2P50052 363 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 GEMIN4P57678 1058 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 NANOS2P60321 138 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 G3BP1Q13283 466 aaKnown RBP eCLIP4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 ALKBH1Q13686 389 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 PFKFB3Q16875 520 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 CC2D1BQ5T0F9 858 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 DSTYKQ6XUX3 929 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 MAATS1Q7Z4T9 603 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 C16orf71Q8IYS4 520 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 GALNT4Q8N4A0 578 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 NANOGP1Q8N7R0 232 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 HVCN1Q96D96 273 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 ARL8BQ9NVJ2 186 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 ASIC5Q9NY37 505 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 SERGEFQ9UGK8 458 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 ITIH6Q6UXX5 1313 aa4.11□□□□□ -1.75
SMCHD1-209ENST00000583441 NOTCH3Q9UM47 2321 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 EME2A4GXA9 379 aaPredicted RBP4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 FAM90A8PA6NJQ4 464 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 TISP43B9A030 160 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 TMEM232C9JQI7 657 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 PEX12O00623 359 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 RNF8O76064 485 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 ENO1P06733 434 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 HNRNPA1P09651 372 aaKnown RBP eCLIP4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 WEE2P0C1S8 567 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 FAM90A13PP0C7W8 464 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 FAM90A24PP0C7X0 464 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 ACP5P13686 325 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 CPA1P15085 419 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 TGM2P21980 687 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 ARL1P40616 181 aaPredicted RBP4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 STAT6P42226 847 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 RPS6KA3P51812 740 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 SLC37A1P57057 533 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 KRTAP10-12P60413 245 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 MPP1Q00013 466 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 CDK18Q07002 472 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 DMWDQ09019 674 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 GPR68Q15743 365 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 GXYLT1Q4G148 440 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 MRPL10Q7Z7H8 261 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 CNGA4Q8IV77 575 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 UEVLDQ8IX04 471 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 TCP11L2Q8N4U5 519 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 LINS1Q8NG48 757 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 CLEC4CQ8WTT0 213 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 REPS1Q96D71 796 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 NUAK2Q9H093 628 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 ASNSD1Q9NWL6 643 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 SH3BP4Q9P0V3 963 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 CNOT7Q9UIV1 285 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 CD207Q9UJ71 328 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 RCE1Q9Y256 329 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 B3GNT3Q9Y2A9 372 aa4.1□□□□□ -1.75
SMCHD1-209ENST00000583441 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 TCRBV5S1A1TA0A578 114 aa4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 PRYO14603 147 aa4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 CNTN5O94779 1100 aa4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 ATF7P17544 494 aaPredicted RBP4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 VPS41P49754 854 aa4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 BAK1Q16611 211 aa4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 PROSER3Q2NL68 480 aa4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 KRT71Q3SY84 523 aa4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 GALNT7Q86SF2 657 aa4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 HEATR4Q86WZ0 1026 aa4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 ADGRF3Q8IZF5 1079 aa4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 NRACQ8N912 160 aa4.09□□□□□ -1.75
SMCHD1-209ENST00000583441 PRSS3P2Q8NHM4 247 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms