RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 FAM155BO75949 473 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 HLA-DQA2P01906 255 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 CRYABP02511 175 aaKnown RBP6.95□□□□□ -1.3
SS18-214ENST00000580003 TBXAS1P24557 533 aaPredicted RBP6.95□□□□□ -1.3
SS18-214ENST00000580003 CYP2J2P51589 502 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 RHAGQ02094 409 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 PTGR1Q14914 329 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 LEXMQ3ZCV2 418 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 GXYLT1Q4G148 440 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 TTLL5Q6EMB2 1281 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 MTFR2Q6P444 385 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 RASGRP2Q7LDG7 609 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 GLCCI1Q86VQ1 547 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 TRIM63Q969Q1 353 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 FAM234AQ9H0X4 552 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 CHODLQ9H9P2 273 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 IL21RQ9HBE5 538 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 TCRBV7S3A2A0A539 114 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 SYN3O14994 580 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 KLRC2P26717 231 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 RUNDC3AQ59EK9 446 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 ANKRD45Q5TZF3 282 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 FAM171A1Q5VUB5 890 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 KDELC2Q7Z4H8 507 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 SCN4BQ8IWT1 228 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 TMEM217Q8N7C4 229 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 AFG1LQ8WV93 481 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 LPAR1Q92633 364 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.94□□□□□ -1.3
SS18-214ENST00000580003 ARHGAP39Q9C0H5 1083 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 PLEKHA2Q9HB19 425 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 ZNF304Q9HCX3 659 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 KLQ9UEF7 1012 aa6.94□□□□□ -1.3
SS18-214ENST00000580003 FAM90A10PA6NDY2 464 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 TMEM247A6NEH6 219 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 CD8B2A6NJW9 211 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 IRAK2O43187 625 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 CYP4B1P13584 511 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 TNFRSF1BP20333 461 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 SLC16A2P36021 539 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 RPS6KA3P51812 740 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 KRTAP10-11P60412 298 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 ZBTB16Q05516 673 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 ENTPD8Q5MY95 495 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 VWA5B1Q5TIE3 1220 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 DAB2IPQ5VWQ8 1189 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 AAGABQ6PD74 315 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 FAM185AQ8N0U4 392 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 SLC25A41Q8N5S1 370 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 KTI12Q96EK9 354 aaPredicted RBP6.93□□□□□ -1.3
SS18-214ENST00000580003 SLC22A11Q9NSA0 550 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 RNF146Q9NTX7 359 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 TMEM248Q9NWD8 314 aa6.93□□□□□ -1.3
SS18-214ENST00000580003 IFNA2P01563 188 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 FGF2P09038 288 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 DHRS4L1P0CG22 281 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 LYL1P12980 280 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 ACP5P13686 325 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 PNPLA4P41247 253 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 ACTR2P61160 394 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 PPATQ06203 517 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 SEMA3AQ14563 771 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 PLK5Q496M5 336 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 C5orf22Q49AR2 442 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 NUGGCQ68CJ6 796 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 RNF144BQ7Z419 303 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 MOGAT3Q86VF5 341 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 NKAPQ8N5F7 415 aaKnown RBP6.92□□□□□ -1.3
SS18-214ENST00000580003 DPP10Q8N608 796 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 CADM1Q9BY67 442 aaKnown RBP6.92□□□□□ -1.3
SS18-214ENST00000580003 TWSG1Q9GZX9 223 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.92□□□□□ -1.3
SS18-214ENST00000580003 ACTR5Q9H9F9 607 aaPredicted RBP6.92□□□□□ -1.3
SS18-214ENST00000580003 Q9N2J8 555 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 THAP1Q9NVV9 213 aa6.92□□□□□ -1.3
SS18-214ENST00000580003 MORC2Q9Y6X9 1032 aaPredicted RBP6.92□□□□□ -1.3
SS18-214ENST00000580003 IFRD1O00458 451 aaPredicted RBP6.91□□□□□ -1.3
SS18-214ENST00000580003 MDM4O15151 490 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 OAZ2O95190 189 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 TK1P04183 234 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 TYK2P29597 1187 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 HNRNPA0Q13151 305 aaKnown RBP6.91□□□□□ -1.3
SS18-214ENST00000580003 THOC5Q13769 683 aaKnown RBP6.91□□□□□ -1.3
SS18-214ENST00000580003 TAF5Q15542 800 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 ZNF484Q5JVG2 852 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 GALNT7Q86SF2 657 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 FTSJ3Q8IY81 847 aaKnown RBP6.91□□□□□ -1.3
SS18-214ENST00000580003 TMEM57Q8N5G2 664 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 C2CD4CQ8TF44 421 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 HERPUD2Q9BSE4 406 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 FRMD8Q9BZ67 464 aaPredicted RBP6.91□□□□□ -1.3
SS18-214ENST00000580003 ACAD9Q9H845 621 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 RMI1Q9H9A7 625 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 PNRC2Q9NPJ4 139 aaKnown RBP6.91□□□□□ -1.3
SS18-214ENST00000580003 DERAQ9Y315 318 aa6.91□□□□□ -1.3
SS18-214ENST00000580003 GAGE12JA6NER3 117 aa6.9□□□□□ -1.3
SS18-214ENST00000580003 TOMM40O96008 361 aa6.9□□□□□ -1.3
SS18-214ENST00000580003 TNNT1P13805 278 aa6.9□□□□□ -1.3
SS18-214ENST00000580003 RXRAP19793 462 aa6.9□□□□□ -1.3
SS18-214ENST00000580003 POLD2P49005 469 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms