RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 IGSF9Q9P2J2 1179 aa11□□□□□ -0.65
SS18-213ENST00000579640 CACNG3O60359 315 aa11□□□□□ -0.65
SS18-213ENST00000579640 MAP3K6O95382 1288 aa11□□□□□ -0.65
SS18-213ENST00000579640 ECEL1O95672 775 aa11□□□□□ -0.65
SS18-213ENST00000579640 GAS8O95995 478 aa11□□□□□ -0.65
SS18-213ENST00000579640 CCNCP24863 283 aa11□□□□□ -0.65
SS18-213ENST00000579640 GDI1P31150 447 aa11□□□□□ -0.65
SS18-213ENST00000579640 PAPOLAP51003 745 aaKnown RBP11□□□□□ -0.65
SS18-213ENST00000579640 DR1Q01658 176 aa11□□□□□ -0.65
SS18-213ENST00000579640 RUNX3Q13761 415 aa11□□□□□ -0.65
SS18-213ENST00000579640 GRM2Q14416 872 aa11□□□□□ -0.65
SS18-213ENST00000579640 HEATR6Q6AI08 1181 aaKnown RBP11□□□□□ -0.65
SS18-213ENST00000579640 TRIM68Q6AZZ1 485 aa11□□□□□ -0.65
SS18-213ENST00000579640 C8orf74Q6P047 294 aa11□□□□□ -0.65
SS18-213ENST00000579640 TTC27Q6P3X3 843 aa11□□□□□ -0.65
SS18-213ENST00000579640 CCDC13Q8IYE1 715 aa11□□□□□ -0.65
SS18-213ENST00000579640 ALLCQ8N6M5 410 aa11□□□□□ -0.65
SS18-213ENST00000579640 CCNYQ8ND76 341 aa11□□□□□ -0.65
SS18-213ENST00000579640 RSAD2Q8WXG1 361 aa11□□□□□ -0.65
SS18-213ENST00000579640 HMCESQ96FZ2 354 aa11□□□□□ -0.65
SS18-213ENST00000579640 EBF3Q9H4W6 596 aa11□□□□□ -0.65
SS18-213ENST00000579640 HPS4Q9NQG7 708 aa11□□□□□ -0.65
SS18-213ENST00000579640 CHD5Q8TDI0 1954 aa11□□□□□ -0.65
SS18-213ENST00000579640 NUP205Q92621 2012 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 CXorf51AA0A1B0GTR3 108 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 FAM187AA6NFU0 413 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 STK10O94804 968 aaKnown RBP10.99□□□□□ -0.65
SS18-213ENST00000579640 ARSAP15289 507 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 SP100P23497 879 aaPredicted RBP10.99□□□□□ -0.65
SS18-213ENST00000579640 KCNJ1P48048 391 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 PLK1P53350 603 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 IL10RBQ08334 325 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 AP1B1Q10567 949 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 SERINC3Q13530 473 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 DMC1Q14565 340 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 AAK1Q2M2I8 961 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 RNF219Q5W0B1 726 aaPredicted RBP10.99□□□□□ -0.65
SS18-213ENST00000579640 GSTA5Q7RTV2 222 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 TP53INP2Q8IXH6 220 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 NOA1Q8NC60 698 aaKnown RBP10.99□□□□□ -0.65
SS18-213ENST00000579640 CCHCR1Q8TD31 782 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 HTR3CQ8WXA8 447 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 BHMTQ93088 406 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 RTP4Q96DX8 246 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 P2RY11Q96G91 374 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 ZFYVE19Q96K21 471 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 LGMNQ99538 433 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 TMEM121Q9BTD3 319 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 ACE2Q9BYF1 805 aaPredicted RBP10.99□□□□□ -0.65
SS18-213ENST00000579640 MUC3BQ9H195 1237 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 SP110Q9HB58 689 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 PLK2Q9NYY3 685 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 AMACRQ9UHK6 382 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 IPO11Q9UI26 975 aaKnown RBP10.99□□□□□ -0.65
SS18-213ENST00000579640 FBXO10Q9UK96 956 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 HPCAL4Q9UM19 191 aa10.99□□□□□ -0.65
SS18-213ENST00000579640 ZSCAN5CA6NGD5 496 aaPredicted RBP10.98□□□□□ -0.65
SS18-213ENST00000579640 SGK1O00141 431 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 KCNN4O15554 427 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 KDELR3O43731 214 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 MAFKO60675 156 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 RBL1P28749 1068 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 CSKP41240 450 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 PTGIRP43119 386 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 LMAN2Q12907 356 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 FSCBQ5H9T9 825 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 IL31Q6EBC2 164 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 ZNF354CQ86Y25 554 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.98□□□□□ -0.65
SS18-213ENST00000579640 CCDC89Q8N998 374 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 DCAF4L2Q8NA75 395 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 NETO2Q8NC67 525 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 OR7D4Q8NG98 312 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 NSMCE1Q8WV22 266 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 LMLNQ96KR4 655 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 ZNF599Q96NL3 588 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 VAT1Q99536 393 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 FEM1AQ9BSK4 669 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 RPP25Q9BUL9 199 aaKnown RBP10.98□□□□□ -0.65
SS18-213ENST00000579640 BRD9Q9H8M2 597 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 USP29Q9HBJ7 922 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 ATP13A1Q9HD20 1204 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 TRPV5Q9NQA5 729 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 A0A0D9SEW6 157 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.98□□□□□ -0.65
SS18-213ENST00000579640 ARNTLO00327 626 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 MATN3O15232 486 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 RAD51CO43502 376 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 PRAMEF11O60813 436 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 VAV1P15498 845 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 ACTN2P35609 894 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 ACVRL1P37023 503 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 EIF2DP41214 584 aaKnown RBP10.98□□□□□ -0.65
SS18-213ENST00000579640 IFI35P80217 286 aaPredicted RBP10.98□□□□□ -0.65
SS18-213ENST00000579640 PPP1R7Q15435 360 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 P3H1Q32P28 736 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 ITPRIPL2Q3MIP1 535 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 PREPLQ4J6C6 727 aaPredicted RBP10.98□□□□□ -0.65
SS18-213ENST00000579640 TEX35Q5T0J7 233 aa10.98□□□□□ -0.65
SS18-213ENST00000579640 TMCO4Q5TGY1 634 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms