RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 DEF6Q9H4E7 631 aa19.83■□□□□ 0.77
SS18-208ENST00000577751 MTG2Q9H4K7 406 aa19.83■□□□□ 0.77
SS18-208ENST00000577751 ITM2CQ9NQX7 267 aa19.83■□□□□ 0.77
SS18-208ENST00000577751 NDFIP2Q9NV92 336 aa19.83■□□□□ 0.77
SS18-208ENST00000577751 USP36Q9P275 1121 aaKnown RBP19.83■□□□□ 0.77
SS18-208ENST00000577751 MBD1Q9UIS9 605 aaPredicted RBP19.83■□□□□ 0.77
SS18-208ENST00000577751 THADAQ6YHU6 1953 aa19.83■□□□□ 0.76
SS18-208ENST00000577751 NYNRINQ9P2P1 1898 aaKnown RBP19.82■□□□□ 0.76
SS18-208ENST00000577751 IGHV1OR15-9A0A0B4J2B8 117 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 TARSL2A2RTX5 802 aaKnown RBP19.82■□□□□ 0.76
SS18-208ENST00000577751 TTC34A8MYJ7 566 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 RHOBTB1O94844 696 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 PCK1P35558 622 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 NNMTP40261 264 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 MAPKAPK2P49137 400 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 KRT83P78385 493 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 PIGHQ14442 188 aaPredicted RBP19.82■□□□□ 0.76
SS18-208ENST00000577751 ERMARDQ5T6L9 678 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 C9orf64Q5T6V5 341 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 PMS2CLQ68D20 193 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 RWDD4Q6NW29 188 aaKnown RBP19.82■□□□□ 0.76
SS18-208ENST00000577751 KIAA1324Q6UXG2 1013 aaKnown RBP19.82■□□□□ 0.76
SS18-208ENST00000577751 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.82■□□□□ 0.76
SS18-208ENST00000577751 DCLK2Q8N568 766 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 NIPA2Q8N8Q9 360 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 DCAF4L2Q8NA75 395 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 FRS2Q8WU20 508 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 PRCCQ92733 491 aaPredicted RBP19.82■□□□□ 0.76
SS18-208ENST00000577751 PTPRN2Q92932 1015 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 SIPA1Q96FS4 1042 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 CCDC42Q96M95 316 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 ANP32EQ9BTT0 268 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 NUP85Q9BW27 656 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 CD93Q9NPY3 652 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 NCDNQ9UBB6 729 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 GMEB2Q9UKD1 530 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 RIF1Q5UIP0 2472 aaKnown RBP19.82■□□□□ 0.76
SS18-208ENST00000577751 CEP192Q8TEP8 1941 aa19.82■□□□□ 0.76
SS18-208ENST00000577751 FAM186AA6NE01 2351 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 EIF3CLB5ME19 914 aaKnown RBP19.81■□□□□ 0.76
SS18-208ENST00000577751 ATP9BO43861 1147 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 AKR1B10O60218 316 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 SIN3BO75182 1162 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 IGLV3-19P01714 112 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 GNA12Q03113 381 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 ELF2Q15723 593 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 PSTKQ8IV42 348 aaKnown RBP19.81■□□□□ 0.76
SS18-208ENST00000577751 OR7D4Q8NG98 312 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 EIF3CQ99613 913 aaKnown RBP19.81■□□□□ 0.76
SS18-208ENST00000577751 SNRNP25Q9BV90 132 aaKnown RBP19.81■□□□□ 0.76
SS18-208ENST00000577751 C2orf49Q9BVC5 232 aaPredicted RBP19.81■□□□□ 0.76
SS18-208ENST00000577751 PACSIN1Q9BY11 444 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 RSPH9Q9H1X1 276 aaPredicted RBP19.81■□□□□ 0.76
SS18-208ENST00000577751 PCSK1NQ9UHG2 260 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 IP6K2Q9UHH9 426 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 VPS51Q9UID3 782 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 SLC25A13Q9UJS0 675 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 AP4E1Q9UPM8 1137 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 HS3ST2Q9Y278 367 aa19.81■□□□□ 0.76
SS18-208ENST00000577751 EDDM13A0A1B0GTR0 161 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 WASH4PA8MWX3 477 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 PRPSAP2O60256 369 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 SNAP91O60641 907 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 ZMPSTE24O75844 475 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 EPN2O95208 641 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 H2AFZP0C0S5 128 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 TGM1P22735 817 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 EPHB2P29323 1055 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 HTR7P34969 479 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 RPS14P62263 151 aaKnown RBP19.8■□□□□ 0.76
SS18-208ENST00000577751 SPDYCQ5MJ68 293 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 SLC36A4Q6YBV0 504 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 H2AFVQ71UI9 128 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 SH2D3CQ8N5H7 860 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 RTL3Q8N8U3 475 aaKnown RBP19.8■□□□□ 0.76
SS18-208ENST00000577751 BTBD6Q96KE9 485 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 EPAS1Q99814 870 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 ACE2Q9BYF1 805 aaPredicted RBP19.8■□□□□ 0.76
SS18-208ENST00000577751 SPTLC3Q9NUV7 552 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 GPATCH2LQ9NWQ4 482 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 UVRAGQ9P2Y5 699 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 DNAI1Q9UI46 699 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 ANAPC7Q9UJX3 599 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 USP18Q9UMW8 372 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 CYP8B1Q9UNU6 501 aa19.8■□□□□ 0.76
SS18-208ENST00000577751 TNRC6BQ9UPQ9 1833 aaKnown RBP19.8■□□□□ 0.76
SS18-208ENST00000577751 CREB3O43889 395 aa19.79■□□□□ 0.76
SS18-208ENST00000577751 MT-CO1P00395 513 aa19.79■□□□□ 0.76
SS18-208ENST00000577751 TMEM253P0C7T8 217 aa19.79■□□□□ 0.76
SS18-208ENST00000577751 IL1R2P27930 398 aa19.79■□□□□ 0.76
SS18-208ENST00000577751 TPMTP51580 245 aa19.79■□□□□ 0.76
SS18-208ENST00000577751 ZBTB16Q05516 673 aa19.79■□□□□ 0.76
SS18-208ENST00000577751 CA9Q16790 459 aa19.79■□□□□ 0.76
SS18-208ENST00000577751 DAB2IPQ5VWQ8 1189 aa19.79■□□□□ 0.76
SS18-208ENST00000577751 ZNF564Q8TBZ8 553 aaPredicted RBP19.79■□□□□ 0.76
SS18-208ENST00000577751 CTNNBL1Q8WYA6 563 aaPredicted RBP19.79■□□□□ 0.76
SS18-208ENST00000577751 ARHGEF2Q92974 986 aaKnown RBP19.79■□□□□ 0.76
SS18-208ENST00000577751 FAM129BQ96TA1 746 aa19.79■□□□□ 0.76
SS18-208ENST00000577751 MAGEH1Q9H213 219 aa19.79■□□□□ 0.76
SS18-208ENST00000577751 DHX35Q9H5Z1 703 aaKnown RBP19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms