RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 B3GAT3O94766 335 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 PGK1P00558 417 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 SERPINE1P05121 402 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 SERPINA6P08185 405 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 GRK2P25098 689 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 CTGFP29279 349 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 BRCC3P46736 316 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 ZNF33AQ06730 810 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 EIF4EBP2Q13542 120 aaPredicted RBP10.29□□□□□ -0.76
VPS53-220ENST00000576149 CERCAMQ5T4B2 595 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 CD300LGQ6UXG3 332 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 STRA8Q7Z7C7 330 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 C10orf107Q8IVU9 208 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 WDR75Q8IWA0 830 aaKnown RBP10.29□□□□□ -0.76
VPS53-220ENST00000576149 TEX9Q8N6V9 391 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 DQX1Q8TE96 717 aaKnown RBP10.29□□□□□ -0.76
VPS53-220ENST00000576149 MCUR1Q96AQ8 359 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 ZNF778Q96MU6 729 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 AGAP2Q99490 1192 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 UPF3AQ9H1J1 476 aaKnown RBP10.29□□□□□ -0.76
VPS53-220ENST00000576149 OSBPL2Q9H1P3 480 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 DCLRE1BQ9H816 532 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 TMLHEQ9NVH6 421 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.29□□□□□ -0.76
VPS53-220ENST00000576149 COPG2Q9UBF2 871 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 PADI3Q9ULW8 664 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 M0QZQ0 153 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 MGEA5O60502 916 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 LYPLA1O75608 230 aaPredicted RBP10.29□□□□□ -0.76
VPS53-220ENST00000576149 POMCP01189 267 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 JCHAINP01591 159 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 IGLV3-25P01717 112 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 CYBAP13498 195 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 RAB27AP51159 221 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 TBCCQ15814 346 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 CCDC153Q494R4 210 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 KHDC1Q4VXA5 237 aaKnown RBP10.29□□□□□ -0.76
VPS53-220ENST00000576149 PAN2Q504Q3 1202 aaKnown RBP10.29□□□□□ -0.76
VPS53-220ENST00000576149 FSTL4Q6MZW2 842 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 BEND5Q7L4P6 421 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 CMC1Q7Z7K0 106 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 KLHDC8BQ8IXV7 354 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 N4BP2L2Q92802 583 aaPredicted RBP10.29□□□□□ -0.76
VPS53-220ENST00000576149 RNF34Q969K3 372 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 MFSD3Q96ES6 412 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 RILPQ96NA2 401 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 ZNF570Q96NI8 536 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 ANKRD27Q96NW4 1050 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 EBF4Q9BQW3 602 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 IL22Q9GZX6 179 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 STN1Q9H668 368 aaKnown RBP10.29□□□□□ -0.76
VPS53-220ENST00000576149 SORCS3Q9UPU3 1222 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 DNAJC16Q9Y2G8 782 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 A0A0U1RQF3 1178 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 B2RBV5 119 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 AP3B1O00203 1094 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 ATP9BO43861 1147 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 CACNG3O60359 315 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 RPLP2P05387 115 aaKnown RBP10.28□□□□□ -0.76
VPS53-220ENST00000576149 ENO1P06733 434 aaKnown RBP10.28□□□□□ -0.76
VPS53-220ENST00000576149 CD52P31358 61 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 CYP2C18P33260 490 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 SERPINB8P50452 374 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 TUBB3Q13509 450 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 DSC3Q14574 896 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 PUS10Q3MIT2 529 aaKnown RBP10.28□□□□□ -0.76
VPS53-220ENST00000576149 HSP90AA5PQ58FG0 334 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 ATG14Q6ZNE5 492 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 LRRTM3Q86VH5 581 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 TMPRSS6Q8IU80 811 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 OR10T2Q8NGX3 314 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 CFAP61Q8NHU2 1237 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 CELF6Q96J87 481 aaKnown RBP10.28□□□□□ -0.76
VPS53-220ENST00000576149 TSGA13Q96PP4 275 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 SORT1Q99523 831 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 APOL2Q9BQE5 337 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 MCMBPQ9BTE3 642 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 TRIM62Q9BVG3 475 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 FAM117AQ9C073 453 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 ZFYVE28Q9HCC9 887 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 CHRAC1Q9NRG0 131 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 ZNF358Q9NW07 568 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 ARHGEF38Q9NXL2 777 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 TAGLN3Q9UI15 199 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 DSEQ9UL01 958 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 SOX13Q9UN79 622 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 NEU3Q9UQ49 428 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 MPOP05164 745 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 RALBP11234 206 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 DNAJB2P25686 324 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 ARRB2P32121 409 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 GMPRP36959 345 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 THPOP40225 353 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 CPA2P48052 419 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 CDK7P50613 346 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 ALDH18A1P54886 795 aaKnown RBP10.28□□□□□ -0.76
VPS53-220ENST00000576149 COG7P83436 770 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 CDH17Q12864 832 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 GRIK3Q13003 919 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 PRPSAP1Q14558 356 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms