RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 FAM182AQ5T1J6 154 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 GRAMD4Q6IC98 578 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 RWDD4Q6NW29 188 aaKnown RBP9.53□□□□□ -0.88
VPS35-211ENST00000569950 LRRC31Q6UY01 552 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 Q6ZS52 159 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 SYCE1Q8N0S2 351 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 KCTD6Q8NC69 237 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 SORCS1Q8WY21 1168 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 FAM3CQ92520 227 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 CLDN23Q96B33 292 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 HMCESQ96FZ2 354 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 MSANTD3Q96H12 275 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 OLFM3Q96PB7 478 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 ACOX2Q99424 681 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 CALN1Q9BXU9 219 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 PDFQ9HBH1 243 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 ZDHHC4Q9NPG8 344 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 POLR3BQ9NW08 1133 aaPredicted RBP9.53□□□□□ -0.88
VPS35-211ENST00000569950 DDX56Q9NY93 547 aaKnown RBP9.53□□□□□ -0.88
VPS35-211ENST00000569950 DEC1Q9P2X7 70 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 DNAI1Q9UI46 699 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 STARD13Q9Y3M8 1113 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 MUC6Q6W4X9 2439 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 KANSL1LA0AUZ9 987 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 RASA4BC9J798 803 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 RASA4O43374 803 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 ADAM23O75077 832 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 ZRANB2O95218 330 aaKnown RBP eCLIP9.52□□□□□ -0.89
VPS35-211ENST00000569950 MAP3K6O95382 1288 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 MT-CO1P00395 513 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 C7P10643 843 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 DESP17661 470 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 GRIA2P42262 883 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 RWDD2BP57060 319 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 SERINC3Q13530 473 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 CDH18Q13634 790 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 TFDP3Q5H9I0 405 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 RNF219Q5W0B1 726 aaPredicted RBP9.52□□□□□ -0.89
VPS35-211ENST00000569950 EGFLAMQ63HQ2 1017 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 MBLAC2Q68D91 279 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 NPNTQ6UXI9 565 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 ZNF783Q6ZMS7 281 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 BBS12Q6ZW61 710 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 RCOR2Q8IZ40 523 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 CCDC33Q8N5R6 958 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 PJA1Q8NG27 643 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 USP33Q8TEY7 942 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 LRRN4Q8WUT4 740 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 CELF6Q96J87 481 aaKnown RBP9.52□□□□□ -0.89
VPS35-211ENST00000569950 NSMCE3Q96MG7 304 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 XPO6Q96QU8 1125 aaKnown RBP9.52□□□□□ -0.89
VPS35-211ENST00000569950 DTLQ9NZJ0 730 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 SAE1Q9UBE0 346 aaPredicted RBP9.52□□□□□ -0.89
VPS35-211ENST00000569950 VPS51Q9UID3 782 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 PLXND1Q9Y4D7 1925 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 NUMA1Q14980 2115 aa9.52□□□□□ -0.89
VPS35-211ENST00000569950 FANCMQ8IYD8 2048 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.51□□□□□ -0.89
VPS35-211ENST00000569950 GOLGA6L9A6NEM1 432 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 TMEM221A6NGB7 291 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 H0Y626 953 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 J3KR12 359 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 M0R296 226 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 TNFRSF10AO00220 468 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 RNF103O00237 685 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 MAN2B1O00754 1011 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 SMAD6O43541 496 aaKnown RBP9.51□□□□□ -0.89
VPS35-211ENST00000569950 RHOCP08134 193 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 DRD1P21728 446 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 OR1E1P30953 314 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 ARL4AP40617 200 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 TNFRSF4P43489 277 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 STK19P49842 368 aaPredicted RBP9.51□□□□□ -0.89
VPS35-211ENST00000569950 VASPP50552 380 aaPredicted RBP9.51□□□□□ -0.89
VPS35-211ENST00000569950 DNA2P51530 1060 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 NDST2P52849 883 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 COPS2P61201 443 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 GALNT2Q10471 571 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 ZNF177Q13360 481 aaPredicted RBP9.51□□□□□ -0.89
VPS35-211ENST00000569950 SLC12A1Q13621 1099 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 KRT81Q14533 505 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 IHHQ14623 411 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 C2orf27AQ580R0 203 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 DGKKQ5KSL6 1271 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 C6orf118Q5T5N4 469 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 PAPD7Q5XG87 772 aaKnown RBP9.51□□□□□ -0.89
VPS35-211ENST00000569950 SUGP1Q8IWZ8 645 aaKnown RBP9.51□□□□□ -0.89
VPS35-211ENST00000569950 AHI1Q8N157 1196 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 RASGEF1CQ8N431 466 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 DCAF4L2Q8NA75 395 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 IL17RCQ8NAC3 791 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 WFIKKN2Q8TEU8 576 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 COG1Q8WTW3 980 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 FRS2Q8WU20 508 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 CYB5D2Q8WUJ1 264 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 UBE2Q2Q8WVN8 375 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 HEMGNQ9BXL5 484 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 OSBPL8Q9BZF1 889 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 OSBPL6Q9BZF3 934 aa9.51□□□□□ -0.89
VPS35-211ENST00000569950 MAGEH1Q9H213 219 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms