RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 PPP1R10Q96QC0 940 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 DCLRE1CQ96SD1 692 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 PNKPQ96T60 521 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 HEPHQ9BQS7 1158 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 CCDC77Q9BR77 488 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 CENPKQ9BS16 269 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 MRI1Q9BV20 369 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 MRPL1Q9BYD6 325 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 KRT23Q9C075 422 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 CDH19Q9H159 772 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 PCED1AQ9H1Q7 454 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 HAUS4Q9H6D7 363 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 FANCEQ9HB96 536 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 SLC38A10Q9HBR0 1119 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 KCNMB3Q9NPA1 279 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 PLCB1Q9NQ66 1216 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 C12orf4Q9NQ89 552 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 WASH6PQ9NQA3 447 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 SDHAF3Q9NRP4 125 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ETNK2Q9NVF9 386 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 PAG1Q9NWQ8 432 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 GID8Q9NWU2 228 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 TAS2R7Q9NYW3 318 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 DLGAP2Q9P1A6 1054 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 KIF17Q9P2E2 1029 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ZNHIT2Q9UHR6 403 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 MOSPD1Q9UJG1 213 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 AJAP1Q9UKB5 411 aaPredicted RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 INTUQ9ULD6 942 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 SLC12A4Q9UP95 1085 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 RUVBL1Q9Y265 456 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 TBC1D30Q9Y2I9 924 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 LRCH1Q9Y2L9 728 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 USP15Q9Y4E8 981 aaPredicted RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 LRRC42Q9Y546 428 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ADGRL2O95490 1459 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 SNAPC4Q5SXM2 1469 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 RPRD2Q5VT52 1461 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 RALGAPBQ86X10 1494 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ZC3H13Q5T200 1668 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 MYO5CQ9NQX4 1742 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ABCC3O15438 1527 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 RUSC2Q8N2Y8 1516 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 WDR33Q9C0J8 1336 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 DIP2AQ14689 1571 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 JCADQ9P266 1359 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 CHD2O14647 1828 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 TRPM1Q7Z4N2 1603 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 RGS12O14924 1447 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 MYH15Q9Y2K3 1946 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 DENND4BO75064 1496 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 RAPGEF2Q9Y4G8 1499 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 FAM237AA0A1B0GTK4 181 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 VPS37CA5D8V6 355 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 GOLGA8JA6NMD2 632 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 FAM171A2A8MVW0 826 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 GRXCR1A8MXD5 290 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 PI4K2BG5E9Z4 385 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 GCOM1H8Y6P7 765 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 DNM1LO00429 736 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 PLOD2O00469 737 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 NCAM2O15394 837 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 CNOT3O75175 753 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 NCR1O76036 304 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 DDHD2O94830 711 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 INMTO95050 263 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 NDUFA10O95299 355 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 POP4O95707 220 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 DDX58O95786 925 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 ABHD16AO95870 558 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 PEX11BO96011 259 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ITGB1P05556 798 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 MYL3P08590 195 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ALOX5P09917 674 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 MYZAPP0CAP1 466 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 HPGDP15428 266 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 HSPA6P17066 643 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 LAG3P18627 525 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 POLR2CP19387 275 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 KCNA3P22001 575 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 CRABP2P29373 138 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 SERPINB3P29508 390 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 IFNA8P32881 189 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 PCK1P35558 622 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 HSPA9P38646 679 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 RGS2P41220 211 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ETV1P50549 477 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 HNRNPFP52597 415 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 CHN2P52757 468 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ALDH18A1P54886 795 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 SRP54P61011 504 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 TGFB2P61812 414 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 POLR2GP62487 172 aaKnown RBP eCLIP3.37□□□□□ -1.87
VPS35-208ENST00000568612 KRT85P78386 507 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ATP8B2P98198 1209 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 KDSRQ06136 332 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 GRSF1Q12849 480 aaKnown RBP eCLIP3.37□□□□□ -1.87
VPS35-208ENST00000568612 PDCLQ13371 301 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 MTMR1Q13613 665 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 CUL1Q13616 776 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms