RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 DEC1Q9P2X7 70 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 TLR6Q9Y2C9 796 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 LUC7L2Q9Y383 392 aaKnown RBP14.34□□□□□ -0.11
CLN3-235ENST00000568497 RAD54BQ9Y620 910 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 MUC22E2RYF6 1773 aaPredicted RBP14.34□□□□□ -0.11
CLN3-235ENST00000568497 A0A087X0T9 212 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 TCRBV5S1A1TA0A578 114 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 CAPN8A6NHC0 703 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 MEI4A8MW99 385 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 KCNU1A8MYU2 1149 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 CBFA2T2O43439 604 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 CACNG3O60359 315 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 ZNF217O75362 1048 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 PAGE1O75459 146 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 DKK1O94907 266 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 PENKP01210 267 aaPredicted RBP14.33□□□□□ -0.12
CLN3-235ENST00000568497 FTLP02792 175 aaPredicted RBP14.33□□□□□ -0.12
CLN3-235ENST00000568497 FAM228BP0C875 321 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 HOXB2P14652 356 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 PDGFRAP16234 1089 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 EIF4A3P38919 411 aaKnown RBP14.33□□□□□ -0.12
CLN3-235ENST00000568497 GRIA2P42262 883 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 TNFRSF4P43489 277 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 DGKGP49619 791 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 ZNF75DP51815 510 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 ZBED6P86452 979 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 CAMK2BQ13554 666 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 MS4A13Q5J8X5 152 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 WDR45BQ5MNZ6 344 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 ADGRF1Q5T601 910 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 DNAJC24Q6P3W2 148 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 TRMT11Q7Z4G4 463 aaKnown RBP14.33□□□□□ -0.12
CLN3-235ENST00000568497 FAM217AQ8IXS0 508 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 ZNF513Q8N8E2 541 aaPredicted RBP14.33□□□□□ -0.12
CLN3-235ENST00000568497 TERB1Q8NA31 727 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 ZNF397Q8NF99 534 aaPredicted RBP14.33□□□□□ -0.12
CLN3-235ENST00000568497 OTUB2Q96DC9 234 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 ARHGEF26Q96DR7 871 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 TMA16Q96EY4 203 aaKnown RBP14.33□□□□□ -0.12
CLN3-235ENST00000568497 CDC6Q99741 560 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 NUP58Q9BVL2 599 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 SELENOOQ9BVL4 669 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 PACSIN1Q9BY11 444 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 TKTL2Q9H0I9 626 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 MTG2Q9H4K7 406 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 GAREM1Q9H706 876 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 IL21RQ9HBE5 538 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 GPATCH2LQ9NWQ4 482 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 TOR4AQ9NXH8 423 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 MARK1Q9P0L2 795 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 ADAMTS1Q9UHI8 967 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 VANGL2Q9ULK5 521 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 HS3ST4Q9Y661 456 aa14.33□□□□□ -0.12
CLN3-235ENST00000568497 A0A1W2PQJ5 194 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 C2CD4BA6NLJ0 364 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 PLK4O00444 970 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 RRP8O43159 456 aaKnown RBP14.32□□□□□ -0.12
CLN3-235ENST00000568497 CCP110O43303 1012 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 CNTN5O94779 1100 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 CER1O95813 267 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 APOEP02649 317 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 GLI1P08151 1106 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 HLA-FP30511 346 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 PRKCIP41743 596 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 SLC11A2P49281 568 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 SEMG2Q02383 582 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 ARID5BQ14865 1188 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 TAF1BQ53T94 588 aaPredicted RBP14.32□□□□□ -0.12
CLN3-235ENST00000568497 FIGNQ5HY92 759 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 SPECC1LQ69YQ0 1117 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 CACUL1Q86Y37 369 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 ZCCHC9Q8N567 271 aaKnown RBP14.32□□□□□ -0.12
CLN3-235ENST00000568497 CCDC185Q8N715 623 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 OR52K2Q8NGK3 314 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 KCNV2Q8TDN2 545 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 FOXJ1Q92949 421 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 ZNF653Q96CK0 615 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 NXPE2Q96DL1 559 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 ZNF419Q96HQ0 510 aaPredicted RBP14.32□□□□□ -0.12
CLN3-235ENST00000568497 MIR1-1HGQ9H1L0 117 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 ABCB8Q9NUT2 735 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 WDR35Q9P2L0 1181 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 MYO6Q9UM54 1294 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 TFR2Q9UP52 801 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 DAAM1Q9Y4D1 1078 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 ITIH6Q6UXX5 1313 aa14.32□□□□□ -0.12
CLN3-235ENST00000568497 KNTC1P50748 2209 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 PTPRQQ9UMZ3 2332 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 TEX51A0A1B0GUA7 166 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.31□□□□□ -0.12
CLN3-235ENST00000568497 E9PAM4 449 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 FLRT2O43155 660 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 SERPING1P05155 500 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 ZNF883P0CG24 379 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 KRT3P12035 628 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 EIF2S3P41091 472 aaKnown RBP14.31□□□□□ -0.12
CLN3-235ENST00000568497 CTSOP43234 321 aaPredicted RBP14.31□□□□□ -0.12
CLN3-235ENST00000568497 HDAC4P56524 1084 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 KCNC4Q03721 635 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 AUHQ13825 339 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms