RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 PRSS16Q9NQE7 514 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 TMEM248Q9NWD8 314 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 BCCIPQ9P287 314 aaKnown RBP eCLIP10.06□□□□□ -0.8
CLK3-220ENST00000567992 PCSK1NQ9UHG2 260 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 VPS51Q9UID3 782 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 SLCO3A1Q9UIG8 710 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 MBD1Q9UIS9 605 aaPredicted RBP10.06□□□□□ -0.8
CLK3-220ENST00000567992 ANAPC7Q9UJX3 599 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 VPS28Q9UK41 221 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 USP18Q9UMW8 372 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 PLA2G4CQ9UP65 541 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 AP4E1Q9UPM8 1137 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 CEP192Q8TEP8 1941 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 WASH4PA8MWX3 477 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 GFRA3O60609 400 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 SIN3BO75182 1162 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 ZMPSTE24O75844 475 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 H2AFZP0C0S5 128 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 VAV1P15498 845 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 OR1E1P30953 314 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 MAPKAPK2P49137 400 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 ARF5P84085 180 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 GNA12Q03113 381 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 SULT2A1Q06520 285 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 SIM2Q14190 667 aaPredicted RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 PIGHQ14442 188 aaPredicted RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 ACAP1Q15027 740 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 LPAL2Q16609 132 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 TSR1Q2NL82 804 aaKnown RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 PLK5Q496M5 336 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 ERMARDQ5T6L9 678 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 C9orf64Q5T6V5 341 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 RWDD4Q6NW29 188 aaKnown RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 H2AFVQ71UI9 128 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 ALYREFQ86V81 257 aaKnown RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 KBTBD6Q86V97 674 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 TMEM139Q8IV31 216 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 PSTKQ8IV42 348 aaKnown RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 ABCA7Q8IZY2 2146 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 FAM160A2Q8N612 972 aaPredicted RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 RTL3Q8N8U3 475 aaKnown RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 DCAF4L2Q8NA75 395 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 OR2T3Q8NH03 318 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 FRS2Q8WU20 508 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 RLN3Q8WXF3 142 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 CTNNBL1Q8WYA6 563 aaPredicted RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 ZC3H10Q96K80 434 aaKnown RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 PANX2Q96RD6 677 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 ACE2Q9BYF1 805 aaPredicted RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 MUC3BQ9H195 1237 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 DUSP15Q9H1R2 295 aaPredicted RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 RETREG1Q9H6L5 497 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 OSGEPQ9NPF4 335 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 USP36Q9P275 1121 aaKnown RBP10.05□□□□□ -0.8
CLK3-220ENST00000567992 UVRAGQ9P2Y5 699 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 IP6K2Q9UHH9 426 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 HS3ST2Q9Y278 367 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 INVSQ9Y283 1065 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 THADAQ6YHU6 1953 aa10.05□□□□□ -0.8
CLK3-220ENST00000567992 DNAH14Q0VDD8 3507 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 IGHV1OR15-9A0A0B4J2B8 117 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 SOWAHDA6NJG2 315 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 EIF3CLB5ME19 914 aaKnown RBP10.04□□□□□ -0.8
CLK3-220ENST00000567992 ATP9BO43861 1147 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 CREB3O43889 395 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 PRPSAP2O60256 369 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 SYNCRIPO60506 623 aaKnown RBP10.04□□□□□ -0.8
CLK3-220ENST00000567992 RNF8O76064 485 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 MTA2O94776 668 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 PROSCO94903 275 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 CD160O95971 181 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 MT-CO1P00395 513 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 IGLV3-19P01714 112 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 SRCP12931 536 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 DESP17661 470 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 EPHB2P29323 1055 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 HTR7P34969 479 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 ACVRL1P37023 503 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 DPYSQ14117 519 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 TCEAL1Q15170 157 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 DPYSL2Q16555 572 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 SMTNL2Q2TAL5 461 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 USP39Q53GS9 565 aaKnown RBP10.04□□□□□ -0.8
CLK3-220ENST00000567992 KCNT1Q5JUK3 1230 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 PMS2CLQ68D20 193 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 PRR23BQ6ZRT6 265 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 METTL3Q86U44 580 aaKnown RBP10.04□□□□□ -0.8
CLK3-220ENST00000567992 CACUL1Q86Y37 369 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 TMPRSS6Q8IU80 811 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 SH2D3CQ8N5H7 860 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 PTPRN2Q92932 1015 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 ARHGEF2Q92974 986 aaKnown RBP10.04□□□□□ -0.8
CLK3-220ENST00000567992 EIF3CQ99613 913 aaKnown RBP10.04□□□□□ -0.8
CLK3-220ENST00000567992 EPAS1Q99814 870 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 C2orf49Q9BVC5 232 aaPredicted RBP10.04□□□□□ -0.8
CLK3-220ENST00000567992 KLC2Q9H0B6 622 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 RSPH9Q9H1X1 276 aaPredicted RBP10.04□□□□□ -0.8
CLK3-220ENST00000567992 DHX35Q9H5Z1 703 aaKnown RBP10.04□□□□□ -0.8
CLK3-220ENST00000567992 PRDM16Q9HAZ2 1276 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 CTTNBP2NLQ9P2B4 639 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms