RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 VANGL2Q9ULK5 521 aa13.82□□□□□ -0.2
CLK3-218ENST00000566926 RAD54BQ9Y620 910 aa13.82□□□□□ -0.2
CLK3-218ENST00000566926 CAPN6Q9Y6Q1 641 aa13.82□□□□□ -0.2
CLK3-218ENST00000566926 MUC22E2RYF6 1773 aaPredicted RBP13.81□□□□□ -0.2
CLK3-218ENST00000566926 GRID2IPA4D2P6 1211 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 C2CD4BA6NLJ0 364 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 BUB1O43683 1085 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 SRPRAP08240 638 aaKnown RBP13.81□□□□□ -0.2
CLK3-218ENST00000566926 PRLRP16471 622 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 NDUFV2P19404 249 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 TFE3P19532 575 aaPredicted RBP13.81□□□□□ -0.2
CLK3-218ENST00000566926 GPD1P21695 349 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 RRM1P23921 792 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 CSKP41240 450 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 SLC1A1P43005 524 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 CDH4P55283 916 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 ATP11AP98196 1134 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 FUT11Q495W5 492 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 C5orf22Q49AR2 442 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 PITRM1Q5JRX3 1037 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 RNF219Q5W0B1 726 aaPredicted RBP13.81□□□□□ -0.2
CLK3-218ENST00000566926 PMS2CLQ68D20 193 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 LPCAT2Q7L5N7 544 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 BNIPLQ7Z465 357 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 SLFN11Q7Z7L1 901 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 METTL3Q86U44 580 aaKnown RBP13.81□□□□□ -0.2
CLK3-218ENST00000566926 KIAA2013Q8IYS2 634 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 EMC1Q8N766 993 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 LRRC57Q8N9N7 239 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 CYB5D2Q8WUJ1 264 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 MRGPRX1Q96LB2 322 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 TMEM245Q9H330 911 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 PRDM16Q9HAZ2 1276 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 CD248Q9HCU0 757 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 CALCOCO1Q9P1Z2 691 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 SALL4Q9UJQ4 1053 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 USP18Q9UMW8 372 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 TFR2Q9UP52 801 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 INVSQ9Y283 1065 aa13.81□□□□□ -0.2
CLK3-218ENST00000566926 TNRC6BQ9UPQ9 1833 aaKnown RBP13.8□□□□□ -0.2
CLK3-218ENST00000566926 NYNRINQ9P2P1 1898 aaKnown RBP13.8□□□□□ -0.2
CLK3-218ENST00000566926 MYO1FO00160 1098 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 DCLK1O15075 740 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 PALMO75781 387 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 ACADMP11310 421 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 TCP1P17987 556 aaKnown RBP13.8□□□□□ -0.2
CLK3-218ENST00000566926 SDHBP21912 280 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 PRKCHP24723 683 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 MAN1A1P33908 653 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 DPP6P42658 865 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 PLK1P53350 603 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 ECT2LQ008S8 904 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 LMNB2Q03252 620 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 SPEM2Q0P670 501 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 MAMLD1Q13495 774 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 CAMK2GQ13555 558 aaPredicted RBP13.8□□□□□ -0.2
CLK3-218ENST00000566926 CSRP2Q16527 193 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 CDO1Q16878 200 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 MAP7D1Q3KQU3 841 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 PLEKHG6Q3KR16 790 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 CCDC14Q49A88 953 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 FSCBQ5H9T9 825 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 PAPD7Q5XG87 772 aaKnown RBP13.8□□□□□ -0.2
CLK3-218ENST00000566926 TRNP1Q6NT89 227 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 DCUN1D2Q6PH85 259 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 KIAA1324Q6UXG2 1013 aaKnown RBP13.8□□□□□ -0.2
CLK3-218ENST00000566926 PHLDB2Q86SQ0 1253 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 DAAM2Q86T65 1068 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 FAM131BQ86XD5 332 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 TMPRSS6Q8IU80 811 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 OR2T3Q8NH03 318 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 JOSD2Q8TAC2 188 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 FNIP1Q8TF40 1166 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 RLN3Q8WXF3 142 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 PRCCQ92733 491 aaPredicted RBP13.8□□□□□ -0.2
CLK3-218ENST00000566926 IGSF8Q969P0 613 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 ARHGEF26Q96DR7 871 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 SIPA1Q96FS4 1042 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 ADAM33Q9BZ11 813 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 RETREG1Q9H6L5 497 aa13.8□□□□□ -0.2
CLK3-218ENST00000566926 DRGXA6NNA5 263 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 MIF4GDA9UHW6 222 aaKnown RBP13.79□□□□□ -0.2
CLK3-218ENST00000566926 PRR5-ARHGAP8B1AHC4 643 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 CES2O00748 559 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 OXTRP30559 389 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 RFC1P35251 1148 aaPredicted RBP13.79□□□□□ -0.2
CLK3-218ENST00000566926 ARHGAP8P85298 464 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 SFSWAPQ12872 951 aaKnown RBP13.79□□□□□ -0.2
CLK3-218ENST00000566926 PTPRNQ16849 979 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 PEX26Q7Z412 305 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 SETD3Q86TU7 594 aaPredicted RBP13.79□□□□□ -0.2
CLK3-218ENST00000566926 CENPIQ92674 756 aaPredicted RBP13.79□□□□□ -0.2
CLK3-218ENST00000566926 NCAPGQ9BPX3 1015 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 ARRDC1-AS1Q9H2J1 176 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 OSGEPQ9NPF4 335 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 ITM2CQ9NQX7 267 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 VPS45Q9NRW7 570 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 SEMA4GQ9NTN9 838 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 IP6K2Q9UHH9 426 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 AMFRQ9UKV5 643 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms