RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 RPGRIP1Q96KN7 1286 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 MRGPRX4Q96LA9 322 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 SDF4Q9BRK5 362 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 PARD6BQ9BYG5 372 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 PANK2Q9BZ23 570 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 VPS16Q9H269 839 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 LIN28AQ9H9Z2 209 aaKnown RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 DACT1Q9NYF0 836 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 GJD2Q9UKL4 321 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 TTC7AQ9ULT0 858 aaPredicted RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 GPR34Q9UPC5 381 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 GPR52Q9Y2T5 361 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 MTO1Q9Y2Z2 717 aaKnown RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 CFAP20Q9Y6A4 193 aaKnown RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 NCAPD3P42695 1498 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 MAST3O60307 1309 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 LOC100653049A0A140TA62 436 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 MAGEB16A2A368 324 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 CDHR4A6H8M9 788 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 EIF3CLB5ME19 914 aaKnown RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 GOLGA8MH3BSY2 632 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 PSMD14O00487 310 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 GRM6O15303 877 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 ACSL4O60488 711 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 KRT34O76011 436 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 NUDT3O95989 172 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 PENKP01210 267 aaPredicted RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 PNMA6AP0CW24 399 aaPredicted RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 CYP2A6P11509 494 aaPredicted RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 CDK4P11802 303 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 GAP43P17677 238 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 IL32P24001 234 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 IDUAP35475 653 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 LONP1P36776 959 aaKnown RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 ACADSBP45954 432 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 TUFMP49411 452 aaKnown RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 ARHGDIBP52566 201 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 ARFIP1P53367 373 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 RARSP54136 660 aaKnown RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 AK2P54819 239 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 HADHBP55084 474 aaKnown RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 SLC26A5P58743 744 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 NOMO3P69849 1222 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 CBX3Q13185 183 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 CUL1Q13616 776 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 IL10RAQ13651 578 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 GBX1Q14549 363 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 ERCC6LQ2NKX8 1250 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 C3orf36Q3SXR2 165 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 TUBB8Q3ZCM7 444 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 HSP90AA5PQ58FG0 334 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 NOMO2Q5JPE7 1267 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 BEND6Q5SZJ8 279 aaPredicted RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 NCAPH2Q6IBW4 605 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 SLC30A6Q6NXT4 461 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 MIS18BP1Q6P0N0 1132 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 ARHGAP11AQ6P4F7 1023 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 ZYG11AQ6WRX3 759 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 GADL1Q6ZQY3 521 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 CCDC121Q6ZUS5 278 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 GPR149Q86SP6 731 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 TTC7BQ86TV6 843 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 KRT73Q86Y46 540 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 C12orf56Q8IXR9 622 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 CDC26Q8NHZ8 85 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 TBC1D15Q8TC07 691 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 AGR3Q8TD06 166 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 RNF139Q8WU17 664 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 PDLIM2Q96JY6 352 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 CCDC43Q96MW1 224 aaKnown RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 RUNDC3BQ96NL0 473 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 EIF3CQ99613 913 aaKnown RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 HNRNPABQ99729 332 aaKnown RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 AIFM2Q9BRQ8 373 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 FAM129AQ9BZQ8 928 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 CENPHQ9H3R5 247 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 XKR8Q9H6D3 395 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 TM9SF3Q9HD45 589 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 MAN1C1Q9NR34 630 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 GLRX2Q9NS18 164 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 C1orf112Q9NSG2 853 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 TRMT13Q9NUP7 481 aaKnown RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 TBCCD1Q9NVR7 557 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.32□□□□□ -1.56
VPS35-205ENST00000563984 CIDEBQ9UHD4 219 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 DDX19BQ9UMR2 479 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 CBY1Q9Y3M2 126 aa5.32□□□□□ -1.56
VPS35-205ENST00000563984 ZFP37Q9Y6Q3 630 aaPredicted RBP5.32□□□□□ -1.56
VPS35-205ENST00000563984 NSD2O96028 1365 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 CCDC78A2IDD5 438 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 LRRC14BA6NHZ5 514 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 RRN3P2A6NIE6 340 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 ACOD1A6NK06 481 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 LRRIQ3A6PVS8 624 aaPredicted RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 F8W810 466 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 GCOM1H8Y6P7 765 aaPredicted RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 EYA2O00167 538 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 CHUKO15111 745 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 WDR46O15213 610 aaKnown RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms