RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 GUCA1BQ9UMX6 200 aa10.05□□□□□ -0.8
CLK3-208ENST00000562626 MRPS17Q9Y2R5 130 aaKnown RBP10.05□□□□□ -0.8
CLK3-208ENST00000562626 STARD13Q9Y3M8 1113 aa10.05□□□□□ -0.8
CLK3-208ENST00000562626 RAD54BQ9Y620 910 aa10.05□□□□□ -0.8
CLK3-208ENST00000562626 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.05□□□□□ -0.8
CLK3-208ENST00000562626 CACNA1GO43497 2377 aa10.05□□□□□ -0.8
CLK3-208ENST00000562626 ADAMTS9Q9P2N4 1935 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 WASH4PA8MWX3 477 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 K7ERQ8 282 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 SPOPO43791 374 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 ZMPSTE24O75844 475 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 MAP3K6O95382 1288 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 KLF8O95600 359 aaPredicted RBP10.04□□□□□ -0.8
CLK3-208ENST00000562626 CD160O95971 181 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 MT-CO1P00395 513 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 KRT1P04264 644 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 TDGF1P13385 188 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 VAV1P15498 845 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 KDELR1P24390 212 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 OR1E1P30953 314 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 RPS9P46781 194 aaKnown RBP10.04□□□□□ -0.8
CLK3-208ENST00000562626 PLK1P53350 603 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 NAP1L1P55209 391 aaKnown RBP10.04□□□□□ -0.8
CLK3-208ENST00000562626 ARF5P84085 180 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 GNA12Q03113 381 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 DMWDQ09019 674 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 MTA1Q13330 715 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 LRRC32Q14392 662 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 ZNF234Q14588 700 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 DCAF12L1Q5VU92 463 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 AFMIDQ63HM1 303 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 KIAA1211LQ6NV74 962 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 C1orf228Q6PIY5 440 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 TSSK4Q6SA08 328 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 MFSD7Q6UXD7 560 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 LINGO4Q6UY18 593 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 LEKR1Q6ZMV7 388 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 PSTKQ8IV42 348 aaKnown RBP10.04□□□□□ -0.8
CLK3-208ENST00000562626 SUGP1Q8IWZ8 645 aaKnown RBP10.04□□□□□ -0.8
CLK3-208ENST00000562626 AHI1Q8N157 1196 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 C17orf53Q8N3J3 647 aaPredicted RBP10.04□□□□□ -0.8
CLK3-208ENST00000562626 ARHGEF2Q92974 986 aaKnown RBP10.04□□□□□ -0.8
CLK3-208ENST00000562626 TTC17Q96AE7 1141 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 RNF25Q96BH1 459 aaPredicted RBP10.04□□□□□ -0.8
CLK3-208ENST00000562626 FAF2Q96CS3 445 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 HMCESQ96FZ2 354 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 RPL10LQ96L21 214 aaKnown RBP10.04□□□□□ -0.8
CLK3-208ENST00000562626 SLC39A8Q9C0K1 460 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 LRRC19Q9H756 370 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 TMEM51Q9NW97 253 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 KIAA1522Q9P206 1035 aaPredicted RBP10.04□□□□□ -0.8
CLK3-208ENST00000562626 THAP10Q9P2Z0 257 aaPredicted RBP10.04□□□□□ -0.8
CLK3-208ENST00000562626 VPS51Q9UID3 782 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 SLCO3A1Q9UIG8 710 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 ERVW-1Q9UQF0 538 aa10.04□□□□□ -0.8
CLK3-208ENST00000562626 SCN8AQ9UQD0 1980 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 A0A1W2PQF6 199 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 ILVBLA1L0T0 632 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 LRRD1A4D1F6 860 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 TTC34A8MYJ7 566 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 CHURC1-FNTBB4DL54 471 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 RASA4BC9J798 803 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 H3BRJ5 948 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 K7ESF4 209 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 RNF103O00237 685 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 DDX3YO15523 660 aaKnown RBP10.03□□□□□ -0.8
CLK3-208ENST00000562626 RASA4O43374 803 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 SMAD6O43541 496 aaKnown RBP10.03□□□□□ -0.8
CLK3-208ENST00000562626 MFSD11O43934 449 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 KRT10P13645 584 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 DESP17661 470 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 CTNNA1P35221 906 aaKnown RBP10.03□□□□□ -0.8
CLK3-208ENST00000562626 SLC1A1P43005 524 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 HCAR3P49019 387 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 MAPKAPK2P49137 400 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 PEX5P50542 639 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 SLC10A2Q12908 348 aaPredicted RBP10.03□□□□□ -0.8
CLK3-208ENST00000562626 ENPP2Q13822 863 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 KRT81Q14533 505 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 TAZQ16635 292 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 HADHQ16836 314 aaKnown RBP10.03□□□□□ -0.8
CLK3-208ENST00000562626 ANKRD20A8PQ5CZ79 823 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 NCBP2-AS2Q69YL0 99 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 ZNF662Q6ZS27 426 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 SETD3Q86TU7 594 aaPredicted RBP10.03□□□□□ -0.8
CLK3-208ENST00000562626 RHOT1Q8IXI2 618 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 DTWD2Q8NBA8 298 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 KIAA1524Q8TCG1 905 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 WFIKKN2Q8TEU8 576 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 TMEM131Q92545 1883 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 ANP32BQ92688 251 aaKnown RBP10.03□□□□□ -0.8
CLK3-208ENST00000562626 VOPP1Q96AW1 172 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 NCAPGQ9BPX3 1015 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 CALN1Q9BXU9 219 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 ACE2Q9BYF1 805 aaPredicted RBP10.03□□□□□ -0.8
CLK3-208ENST00000562626 MUC3BQ9H195 1237 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 SLC6A17Q9H1V8 727 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 TMEM245Q9H330 911 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 CD93Q9NPY3 652 aa10.03□□□□□ -0.8
CLK3-208ENST00000562626 TRMT1Q9NXH9 659 aaKnown RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms