RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PPP2CBP62714 309 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 PPP2CAP67775 309 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 ELAVL3Q14576 367 aaKnown RBP11.99□□□□□ -0.49
USP3-220ENST00000561381 SHBQ15464 509 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 LRSAM1Q6UWE0 723 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.99□□□□□ -0.49
USP3-220ENST00000561381 GBP6Q6ZN66 633 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 TMPRSS7Q7RTY8 843 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 OR14C36Q8NHC7 312 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 SHC3Q92529 594 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 RNF34Q969K3 372 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 ALG14Q96F25 216 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 PPP1R13BQ96KQ4 1090 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 CCDC86Q9H6F5 360 aaKnown RBP11.99□□□□□ -0.49
USP3-220ENST00000561381 SIX2Q9NPC8 291 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 PLCB1Q9NQ66 1216 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 AASDHPPTQ9NRN7 309 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 KIAA1468Q9P260 1216 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 APEX2Q9UBZ4 518 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 SLC12A6Q9UHW9 1150 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 FZD4Q9ULV1 537 aa11.99□□□□□ -0.49
USP3-220ENST00000561381 DOCK9Q9BZ29 2069 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 A0A1B0GVM2 712 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 A0A1W2PR77 199 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 TCAF2A6NFQ2 919 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 TNFSF14O43557 240 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 HSF2BPO75031 334 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 ADH1BP00325 375 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 TFE3P19532 575 aaPredicted RBP11.98□□□□□ -0.49
USP3-220ENST00000561381 ABCB4P21439 1286 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 C5AR1P21730 350 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 CCR1P32246 355 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 PLK1P53350 603 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 NME3Q13232 169 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 AUHQ13825 339 aaKnown RBP11.98□□□□□ -0.49
USP3-220ENST00000561381 EXOC3L4Q17RC7 722 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 POM121L1PQ3SYA9 428 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 PTPN20Q4JDL3 420 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 RABGAP1LQ5R372 815 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 OTUD1Q5VV17 481 aaPredicted RBP11.98□□□□□ -0.49
USP3-220ENST00000561381 OR6B2Q6IFH4 312 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 C19orf48Q6RUI8 117 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 OLFML1Q6UWY5 402 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 DHRS13Q6UX07 377 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 SND1Q7KZF4 910 aaKnown RBP eCLIP11.98□□□□□ -0.49
USP3-220ENST00000561381 C14orf80Q86SX3 495 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 SLC47A2Q86VL8 602 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 SERAC1Q96JX3 654 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 RPRD1AQ96P16 312 aaPredicted RBP11.98□□□□□ -0.49
USP3-220ENST00000561381 ELF4Q99607 663 aaPredicted RBP11.98□□□□□ -0.49
USP3-220ENST00000561381 ANLNQ9NQW6 1124 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 ASNSD1Q9NWL6 643 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 SARDHQ9UL12 918 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 VANGL2Q9ULK5 521 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 PCDHGC3Q9UN70 934 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 GPSM3Q9Y4H4 160 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 SNX10Q9Y5X0 201 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 HS3ST4Q9Y661 456 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 APC2O95996 2303 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 ACACAQ13085 2346 aa11.98□□□□□ -0.49
USP3-220ENST00000561381 TBC1D3DA0A087WVF3 549 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 TBC1D3IA0A087WXS9 549 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 TBC1D3EA0A087X179 549 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 TBC1D3KA0A087X1G2 549 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 TBC1D3FA6NER0 549 aaPredicted RBP11.97□□□□□ -0.49
USP3-220ENST00000561381 TBC1D3LB9A6J9 549 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 I6L893 689 aaPredicted RBP11.97□□□□□ -0.49
USP3-220ENST00000561381 FOXN3O00409 490 aaPredicted RBP11.97□□□□□ -0.49
USP3-220ENST00000561381 RTN2O75298 545 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 GLI1P08151 1106 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 TBC1D3HP0C7X1 549 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 SLC2A3P11169 496 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 CD38P28907 300 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 CLCN1P35523 988 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 NNMTP40261 264 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 MTIF2P46199 727 aaKnown RBP11.97□□□□□ -0.49
USP3-220ENST00000561381 CCR5P51681 352 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 CLDN6P56747 220 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 SULT2A1Q06520 285 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 SFSWAPQ12872 951 aaKnown RBP11.97□□□□□ -0.49
USP3-220ENST00000561381 SLC12A1Q13621 1099 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 EFHC1Q5JVL4 640 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 TBC1D3GQ6DHY5 549 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 TBC1D3CQ6IPX1 549 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 C11orf57Q6ZUT1 292 aaPredicted RBP11.97□□□□□ -0.49
USP3-220ENST00000561381 TBC1D3Q8IZP1 549 aaPredicted RBP11.97□□□□□ -0.49
USP3-220ENST00000561381 FAM81BQ96LP2 452 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 FEM1AQ9BSK4 669 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 DNAJC12Q9UKB3 198 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 VPS9D1Q9Y2B5 631 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 RAXQ9Y2V3 346 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 OR51B4Q9Y5P0 310 aa11.97□□□□□ -0.49
USP3-220ENST00000561381 KNTC1P50748 2209 aa11.96□□□□□ -0.49
USP3-220ENST00000561381 ADAMTS20P59510 1910 aa11.96□□□□□ -0.49
USP3-220ENST00000561381 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.96□□□□□ -0.49
USP3-220ENST00000561381 GTPBP10A4D1E9 387 aaKnown RBP11.96□□□□□ -0.49
USP3-220ENST00000561381 M0QYT0 321 aa11.96□□□□□ -0.49
USP3-220ENST00000561381 LATO43561 262 aa11.96□□□□□ -0.49
USP3-220ENST00000561381 ATP9BO43861 1147 aa11.96□□□□□ -0.49
USP3-220ENST00000561381 BNIP3LO60238 219 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms