RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 MAPKAPK2P49137 400 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 KCNQ1P51787 676 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 TNK2Q07912 1038 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 TWF1Q12792 350 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 EFTUD2Q15029 972 aaKnown RBP eCLIP13.19□□□□□ -0.37e-14■■■■■ 31
SNX1-211ENST00000560829 KBTBD12Q3ZCT8 623 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 TMEM240Q5SV17 173 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 PSRC1Q6PGN9 363 aaPredicted RBP13.19□□□□□ -0.3
SNX1-211ENST00000560829 DNAJB7Q7Z6W7 309 aaPredicted RBP13.19□□□□□ -0.3
SNX1-211ENST00000560829 MDM1Q8TC05 714 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 MZB1Q8WU39 189 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 ATXN2LQ8WWM7 1075 aaKnown RBP13.19□□□□□ -0.3
SNX1-211ENST00000560829 ARNTL2Q8WYA1 636 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 BADQ92934 168 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 STAMBPL1Q96FJ0 436 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 CFAP36Q96G28 342 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 PPP1R2P1Q96PQ5 205 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 FCRL5Q96RD9 977 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 CASS4Q9NQ75 786 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 IPO11Q9UI26 975 aaKnown RBP13.19□□□□□ -0.3
SNX1-211ENST00000560829 PCDHA11Q9Y5I1 949 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 TMEM120BA0PK00 339 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 AP3B1O00203 1094 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 ALDH1A2O94788 518 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 PEX11BO96011 259 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 BRAFP15056 766 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 CREB1P16220 341 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 SLC18A1P54219 525 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 EPHB3P54753 998 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 PLD1Q13393 1074 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 HNRNPDQ14103 355 aaKnown RBP13.19□□□□□ -0.3
SNX1-211ENST00000560829 PRPSAP1Q14558 356 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 TAF12Q16514 161 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 ANO4Q32M45 955 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 PARP15Q460N3 678 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 ITIH5Q86UX2 942 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 CHSY1Q86X52 802 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 SRRM1Q8IYB3 904 aaKnown RBP13.19□□□□□ -0.3
SNX1-211ENST00000560829 ZNF419Q96HQ0 510 aaPredicted RBP13.19□□□□□ -0.3
SNX1-211ENST00000560829 RPRD1AQ96P16 312 aaPredicted RBP13.19□□□□□ -0.3
SNX1-211ENST00000560829 NACA2Q9H009 215 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 EPN3Q9H201 632 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 CCDC134Q9H6E4 229 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 LRRC40Q9H9A6 602 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 MOCS1Q9NZB8 636 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 PCDH10Q9P2E7 1040 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 ZNF180Q9UJW8 692 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 AAR2Q9Y312 384 aaKnown RBP13.19□□□□□ -0.3
SNX1-211ENST00000560829 ASB3Q9Y575 518 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 MAD1L1Q9Y6D9 718 aa13.19□□□□□ -0.3
SNX1-211ENST00000560829 GREB1Q4ZG55 1949 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 FAM159BA6NKW6 160 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 F5H5T6 163 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 CNPP09543 421 aaKnown RBP13.18□□□□□ -0.3
SNX1-211ENST00000560829 PGAM1P18669 254 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 EN2P19622 333 aaPredicted RBP13.18□□□□□ -0.3
SNX1-211ENST00000560829 SLC11A2P49281 568 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 HARS2P49590 506 aaKnown RBP13.18□□□□□ -0.3
SNX1-211ENST00000560829 YBEYP58557 167 aaPredicted RBP13.18□□□□□ -0.3
SNX1-211ENST00000560829 FAM133BQ5BKY9 247 aaKnown RBP13.18□□□□□ -0.3
SNX1-211ENST00000560829 TFAP2DQ7Z6R9 452 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 TMEM150AQ86TG1 271 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 PRPF39Q86UA1 669 aaKnown RBP13.18□□□□□ -0.3
SNX1-211ENST00000560829 SLC26A11Q86WA9 606 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 LRRC6Q86X45 466 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 KLHL23Q8NBE8 558 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 PHOSPHO2Q8TCD6 241 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 HMCESQ96FZ2 354 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 OXNAD1Q96HP4 312 aaPredicted RBP13.18□□□□□ -0.3
SNX1-211ENST00000560829 RAD9AQ99638 391 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 KLF16Q9BXK1 252 aaPredicted RBP13.18□□□□□ -0.3
SNX1-211ENST00000560829 GLOD4Q9HC38 313 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 SSU72Q9NP77 194 aaKnown RBP13.18□□□□□ -0.3
SNX1-211ENST00000560829 INTS9Q9NV88 658 aaKnown RBP13.18□□□□□ -0.3
SNX1-211ENST00000560829 CXXC1Q9P0U4 656 aaPredicted RBP13.18□□□□□ -0.3
SNX1-211ENST00000560829 IRAK3Q9Y616 596 aa13.18□□□□□ -0.3
SNX1-211ENST00000560829 GOLGA6L7A0A1B0GV03 622 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 FOXO6A8MYZ6 492 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 PRPF4O43172 522 aaKnown RBP eCLIP13.17□□□□□ -0.3
SNX1-211ENST00000560829 FAM155BO75949 473 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 ANXA9O76027 345 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 STC2O76061 302 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 F11P03951 625 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 KRT15P19012 456 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 MGAT1P26572 445 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 SESN2P58004 480 aaPredicted RBP13.17□□□□□ -0.3
SNX1-211ENST00000560829 NAPEPLDQ6IQ20 393 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 ZNF449Q6P9G9 518 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 LILRA6Q6PI73 481 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 HERC6Q8IVU3 1022 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 HERVK_113Q902F9 699 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 TTC17Q96AE7 1141 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 MYEOVQ96EZ4 313 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 ZBED2Q9BTP6 218 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 TRABDQ9H4I3 376 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 IL21Q9HBE4 155 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 STOML2Q9UJZ1 356 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 LZTS1Q9Y250 596 aa13.17□□□□□ -0.3
SNX1-211ENST00000560829 IQANK1A0A1B0GTG1 560 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 TGM5O43548 720 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms